LOC113530122 (cyp11a,LOC108442685,LOC106561846)


Basic Information

Item Value
gene id LOC113530122
gene name cyp11a,LOC108442685,LOC106561846
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15897676 ~ 15905329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919885.2
tctctctctctctctctctctctctctgtctgcttccAGCAGTTCCTGAAGGCACAGAGAAACACATGTAAGTAGCCTATCTGTAATAAGGCACAGGTGAGAAtcctccacctcctctccgTCCCTAGCCAACCCTCGGCCCCGCCTCCGCTGCCACAGTGAGAGATAGAAAAGAGAagtgtgactgagtgagtgggtatgtgtgtgatggcgGTGAGGTACACAGCTTGGAGCGGTTCTTTGGCTCGATCTCTAGCCATAATGGAAGGACCAGGCCAGGTAAGAGCCTGCCACAGCGGGAGCATGCCTGTTGCAAGAGATACACTATTTCCAGCAAGCAGCTCCACTGTCAGGCCCTTCAGTGAGATTCCTGGAATGTGGAAGAACAGCATGGGGAACCTCTACACCTTCTGGAAACTAGATGGATTCAAGAACATCCATCACATAATGGTGCATAACTTCAACACATTTGGGCCCATCTACAGGGAGAAAATCGGGTACTATGAAAGTGTGAATATTATCAACCCTGAGGATGCTGCCATCTTGTTCAAAGCAGAAGGTCACTACCCTAAAAGGCTCAGAGTGGAACCTTGGACCTCCTATCGGGATTTTAGGAACCGCAAATATGGTGTTCTTCTGAAAGATGGAGAGGACTGGCGATCCAACAGAGTCATTCTGAACCGGGAGGTAATCTCGCCGAAGGTGCAGGTGAATTTTGTGCCATTGCTGGATGAGGTGGGCCAGGACTTTGTGGCTCGGGTTCATAAAAAGATTGAAAGAAGTGGACAGAACAAATGGACCACAGATCTGTCCCATGAACTCTTCAAGTATGCACTGGAATCTGTGAGTGCAGTATTATATGGTGAACGTCTGGGGCTGCTGTTGGATTACATTGATCCAGAGGCTCAGCGCTTTATTGACTGCATCACTCTCATGTTCAAGACAACCTGTCCCATGCTGTACATCCCCCCTTCACTGTTACGGCGACTTGGAGCCAAAGTCTGGAAAGACCATGTGGAAGCGTGGGATGGTATTTTCAACCAGGCGGACTACTGTATTCAGAACATCTACAGGAAACTAAGGAAGGAATCTGGAGCTCAGAACAAATATCCCGGAGTGCTAGCCAGCCTTCTTATGCTTGACCGGCTGTCCATTGAGGAAATCAAGGCCAGTGTGACTGAACTGATGGCTGGAGGGGTGGACACTacGTCTATCACCCTCCTCTGGACTCTCTATGAATTGGCTCGGCACCCCGACCTCCAGGAGGAGCTGAGGGCAGAGGTCATTGCAGCTCGCACTGCCTCAAAGGGAGACACAGTGCAGATGCTCAAAATGGTGCCACTGCTCAAAGGTGCTCTGAAAGAGACACTCAGGCTACACCCTGTAGCAGTAAGCCTGCAAAGATACATCACTCAAGATGTAGTGATCCAAAATTACCATATTCCATCTGGGACATTAGTGCAGCTGGGACTGTATGCCATGGGCAGAGACTATCGCATCTTCCCCCGACCAGAGCAGTATCTGCCCTCTCGCTGGCTGAGGAATGAGAGCCACTACTTCAGGAGTTTGGGCTTCGGCTTTGGGCCTCGTCAATGCCTTGGGCGCAGAATTGCAGAGACAGAGATGCAGCTCTTCCTCATCCATATGTTGGAGAACTTCAAGATTGAGAAGCAGAGACAGCTGGAAGTGAGGAGCACGTTTGAGCTTATACTGATCCCTGAGAAACCCATTTTGTTAACTATAAAGCCCCTACTATAAAGCAGTAAATGATAAACTCCTTCCAGAAGGTAATGTTTTAaccattaattaattactaCGAACTATTTCTAACATTGGAAACACATCAagagttaaaaaataaacacggACGACAAATACTGTAcgtaaatgcatttaattttattgtaagaCATGTTTGCTCCTAATGTATTTCTTTGCTGTCTTTTCTTGTTTATACTgcataaaacaacattttaaatactGTGATGTTGAATCAGGTTATTTAAGGGTGTCCAGCTGCTTATGACATATGTGTCCCAAAATGGAGTCTGAAacagttttctttaaataatcaaagaggaaaaaacaatgtTACACGATGTTACTCACTTCAATACCATCATCATATAGCAAGTACTATTTACAAAATACatgtctttttatatatttattgaatttttaagTATTAATTCTTGTGTACTGACCAGTGGCAAGTGATGCAAGGTGGATGTACGTGCAAATCCATGATTGTATTCACTGAGTCTGGTCAACATGTCCTGCTTTTCTTTCCCCCACTGCCTGGCGTTCTCCTCCAGCTACAACACAAAACCGACCCAGCTCTCAGAAGATGGAATTTCGACATTTGTATCCTCGTTAAAGTTAGCTACTCTTTTTAGAAACGCACCTGTTTGCCCAAAGTATGGATGCAGACCTCTGCTCTCTCTAGCTGCTCTAACAGTCTGAGCTTCTCACTGTCTGCAAAAGGCTGCTGGATTTTAATAGAACAACACATACAGCATATTCACTTATTAATTGACTTAGGGGGTTAACACTTATTTTATGAGAAATTTTGAGGTATTTTGCAATAATTGCAATTAGTTGAGTTGCCCAAGACATCTGTCGGACACtgtaattatgaaaatgttttattgagaGATCAATTATTTTTACTTCATGGAGTTTACTAACTGCTTTTCCTGTGTAATGACTCAAGAATTGTGACACTATGCTTGTAATCTCGTTAACTTTATATAGCCTAATTTTAAAAGAGTATGATCAAAGGTTATGAATTCACCATACCTGCTATATATATAGCCTTTTGGCATTAGCACTAACAATGTGAATGGACAATCTGAACACTGTTCAGTGACTTCagtgtgtaggtttttgtgttcaatttattaaatcatttttggcCAAATGGTATCACAGTC

Function

symbol description
cyp11a cholesterol monooxygenase (side-chain-cleaving)

NR:

description
cytochrome P450 cholesterol side chain cleavage

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0008207 C21-steroid hormone metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function
GO:0008386 cholesterol monooxygenase (side-chain-cleaving) activity molecular_function

KEGG:

id description
K00498 CYP11A; cholesterol monooxygenase (side-chain-cleaving)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919885.2 True 2933 mRNA 0.44 9 15897676 15905329

Neighbor

gene id symbol gene type direction distance location
stoml1 stoml1 coding upstream 2222 15891653 ~ 15895454 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding upstream 6937 15888107 ~ 15890739 (+)
hexa hexa coding upstream 15504 15874863 ~ 15882172 (+)
sigirr sigirr coding upstream 56169 15832179 ~ 15841507 (+)
fancf fancf coding upstream 145150 15751139 ~ 15752526 (+)
stra6 stra6 coding downstream 63214 15968543 ~ 15980245 (+)
commd4 commd4,LOC107576274,LOC107757759,LOC107598913 coding downstream 100341 16005670 ~ 16008823 (+)
neil1 neil1 coding downstream 104508 16009837 ~ 16014155 (+)
trnav-aac_18 NA coding downstream 135846 16041175 ~ 16041247 (+)
si:dkeyp-73b11.8 NA coding downstream 140246 16045575 ~ 16048154 (+)
G149276 NA non-coding upstream 79308 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 142764 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 185759 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 328189 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 413773 15483074 ~ 15483903 (+)
G149427 NA non-coding downstream 119515 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 122278 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 349355 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 422927 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 433261 16338590 ~ 16341963 (+)
LOC113529564 ano9,LOC108442698 other upstream 75085 15807990 ~ 15822591 (+)
svip svip other upstream 172585 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 244992 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2068345 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2120805 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1928908 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2277225 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2769681 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2816266 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2842498 18747827 ~ 18796259 (+)

Expression


Co-expression Network