LOC113530128 (LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663)


Basic Information

Item Value
gene id LOC113530128
gene name LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18340453 ~ 18347647 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919897.2
gtggtGCCTGCGCTGTGAGCTACACGGTCCGGTGTCGGCCTTCCTGTTCACAGACTGCCCCGGTACTTCAGAGCCGCAGCGAGCCCGGTGTCCTGCAGCATGTTCAGTTCCGCCCTCCGCCTTTCCCTCTCCGCAGCTCGGAGCATAGCACAAGCCCGACCACAGAATCTCGCTCCTTTAGCTAGCCGCTGCTACTCCCATGGCAAGCAGGAGACAGATGAGGAGTTTGATGCCCGCTGGGTGACCTACTTCAACAAACCAGATATTGATGCTTGGGAGCTCAGGAAAGGTATGAACACTTTGATTGGTTATGACCTGGTACCTGAGCCCAAAATCCTGGAAGCAGCTTTGAGAGCCTGTCGGCGACTAAATGACTTGGGCAGCGCCATCCGTATTCTTGAGGCAGTTAAGGACAAAGCAGGTCCACACAAAGAGATCTATCCATATGTTATCCAAGAGCTTCGTCCCACGCTTAATGAGCTGGGAATTCCTACACCTGAGGAGCTTGGCATTGACAAAGCATAGACTTCTGCAGTCATGAGTCTTCCGAGGGACCGTTGCCATTGTCGGGACTGAGTGGACCTCCTGTACTTGAAGTCTTTGCCACATGTCATGatatttgtgttatatttaaTTGGCCTGTATAATGTTCTTTTGCTTGTAAAATAGTGGTGGACCTAATAAagggagatatatatatttactgaa

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 5A, mitochondrial-like

GO: NA

KEGG:

id description
K02264 COX5A; cytochrome c oxidase subunit 5a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919897.2 True 708 mRNA 0.50 5 18340453 18347647

Neighbor

gene id symbol gene type direction distance location
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding downstream 2030 18318624 ~ 18338423 (-)
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 94749 18228113 ~ 18245704 (-)
lrrc10 lrrc10 coding downstream 121712 18216233 ~ 18218741 (-)
agbl2 agbl2 coding downstream 137828 18184111 ~ 18202625 (-)
ptprz1a ptprz1,LOC108274749 coding downstream 175643 18113006 ~ 18164810 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding upstream 31082 18378729 ~ 18398258 (-)
nptna LOC108274497,LOC108436943 coding upstream 56865 18404512 ~ 18420371 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 100495 18448142 ~ 18457983 (-)
tafa5b fam19a5b,LOC108428378,LOC108274593,LOC103024527,LOC107696241,LOC107716636,LOC107753604,LOC107598818 coding upstream 187298 18534945 ~ 18552473 (-)
zcrb1 zcrb1 coding upstream 310888 18658535 ~ 18659614 (-)
G150891 NA non-coding downstream 1739 18338502 ~ 18338714 (-)
G150875 NA non-coding downstream 34010 18306209 ~ 18306443 (-)
G150854 NA non-coding downstream 37494 18301293 ~ 18302959 (-)
G150834 NA non-coding downstream 85035 18255075 ~ 18255418 (-)
G150776 NA non-coding downstream 227976 18112252 ~ 18112477 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding upstream 25466 18373113 ~ 18376841 (-)
G150988 NA non-coding upstream 73846 18421493 ~ 18422644 (-)
G150989 NA non-coding upstream 75010 18422657 ~ 18423325 (-)
G150996 NA non-coding upstream 97244 18444891 ~ 18445188 (-)
G151009 NA non-coding upstream 160129 18507776 ~ 18507976 (-)
etfbkmt etfbkmt other downstream 35124 18303142 ~ 18305329 (-)
LOC113530223 NA other downstream 35652 18304638 ~ 18304801 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 125966 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1281547 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 2112119 16141119 ~ 16228334 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 6327 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 77672 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 944562 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 1032009 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 1039594 19387241 ~ 19387366 (-)

Expression


Co-expression Network