ctdspl2a (ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990)


Basic Information

Item Value
gene id ctdspl2a
gene name ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17237113 ~ 17248412 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919907.2
CAGCGTAAACatgagtatagtgtgtgtgtgtgtgtttctctgagCTGTGCTGAAGTGAAGTTTTGCTCATGCGCAAGACGGTGCGTTCATTATCATCCGGGTTCTTTCAAGAGTGTCTCGGTGAGGAGGCGGGAAATGGCGTCCCAAGAAGCAGTGGGAGAGGTATGTGTCGCTCCGTGACTCATACTGGACAGACGCGTGAAGGACAGAGACTTTTCTAGCGGTCTCCGCCGTCGTGGCTCCATCCACAGCCACTGCAGGATTGTACTGGTGTAACACTTGGCATTCTTACATGTGACTTTTGGGACAATGAGGCTGAGAGTGCGTAAAGCATCTCAGCAGCCGAGCGCCACCCCACCTGCCCGCACCACCAAGGCCAAGAGGAAGCACTCTGAAGTGGAGCACACCAGGTCCTCCGGAGGAGCCGCCATGCAGAAGAGTGACACTGGCATCTTCTCCACCATCAAGCGATTCATTAGGGGCAATGCTGTCAAGGTGGAGCAGTGTACCCCTGCTAAGAGGAGCCGTGTGGATTGTGACTCTGACAGTAACTTGATCACATCCACCCCACCCACTGGGAACCTGTCCAGCAGAGCTAACCCTAGAACTCGTAGAAAAGGTCCTGCCAATGGAGACACCATGGCATGTCAGAGTAAACTGGTGAAGCCCAATGGGAAGCTGGAGGTGCAGACTGAAGCCCCCAGCAGTCCACCTCGTACCACCCTCCTAGGAACCATCTTTTCTCCTGTTTTCAACTTCTTCTCACCAGCCAACAAAAATGCTACGTCAGGCTCAGACTCCCCTGGGCAGGCAGTCGAGGCAGAGGAGATTGTAAAGCAGCTGGACATGGAACAGCTGGAAGAGACCCCTACTAGCACTACCACCGACAGTAGCAGAGATATTACATTCGACCCAGCACTAAATCCGAGACCTCTGCTGCCCACAGATGCAGctgaggaggagggggagatTGTTACTGAGGCAGACATGCCACCTTTGACAgTTGTTGGATCCAACAACAATTATCCTGATGCTCCAACCTCGCCCCCTGCAGAGGGGACATATGAAGAAGACTGGGAGGTGTTTGATCCCTATTTTTTCATTAAGCACGTTCCACCGTTGACTGAGGAGCAGCTTACCCGTAAGCCAGCACTTCCACTGAAGACCAGGAGTACTCCAGAGTTCTCTCTCGTCCTGGATCTGgatGAGACATTGGTCCACTGCAGCCTGAATGAGCTGGAGGATGCAGCACTGACATTTCCTGTGCTTTTCCAAGATGTCATTTACCAGGTATATGTACGGTTGCGGCCATTCTTCAGAGAGTTCCTGGAACGTATGTCCCAAATTTATGAGATTATTCTTTTTACTGCTTCCAAGAAAGTGTATGCTGACAAGCTGTTGAACATTTTGGATCCTAAGAAACAGCTGGTTAGGCACAGATTGTTTCGTGAGCATTGCGTATGCGTCCAAGGAAACTACATCAAAGACCTTAACATACTTGGGAGAGATCTGTCCAAAACTATAATAATCGACAACTCGCCTCAAGCCTTTGCATACCAGCTGTCCAATGGCATCCCCATTGAGAGCTGGTTTGTGGACAAGAATGACAATGAGCTCCTGAAGCTGGTCCCATTCTTGGAGAAGCTGGTGGAAttgAATGAAGATGTTCGGCCACATATAAGAGAGAAGTTTCGCTTGCACGACCTCTTACCCCCGGATTGAGGCGTCTGATGCTTGCAGATCCACATGACTGTTTTAGTAAATTGGATTTTTCAAAATGGGGGGACAGAAATATACACAACTCTGAACTCTAATGAGGATTTCAAGTACCATTTTACTTTTGCCGACTATGTTTTATGTGGAAATGGGGGTGGGTAATCAACAATTTTAAAGGAATGACTTTCGAGTAtgcatacattttatataaacacgTAAATATAATTGTAATTGAAGGAAAGAACAAAATTCCTCAGCTTTGACTGCCTAGCCACTCTACAGATATTTGTAAGGCTTGGCAGTGGAGGAGACTCAAAGCAGGTTGCTGTTCCCTTTCTGCCTAAATTGGACTTCATGTAAAGTGCTGTGGAGAAGAGGACTGATGTCACTCCTTTTGGTGCTCAAGGGGACACTCTGCCCTCACTAGCCATCGACCTTTGAACCGGAATGGCCAGTTAATTATGGtttcataaacatataaatatatacatattcagttgtgtgtatatgtatatataacatTTGTACATATGTATTTTCCTGTCAGGTTTGTAAAACGTTCCTTTTGCTCTTGAGTTCAACATGCATTCCTTTTAGTTGGAAGGCTTGTTTGATAGATATGCTgactttttattgatttttactATAGGtttgaagttttatttttaaacggCTTCTCTTATGCTTTGTTTTATACATGCTTTTagactggttaaaaaaaaaaaaaacgaaaagaaaaaagcaaacacatcCAGTCATCTGTAAGATGCGTAGCATAATGATGGGAGGTGGGGTGGGTGGGTGgcaaaataatgtaaatcacaAACCTGTCTTTACTGCCTCTTGTGTATTATTCGCTGATATTATGACAAATGAATCAAGGCATTTGGTTTATGACTGCTTTCACTTCGTATGTTCTTTGGggagttttaatgtttttattcaattgttagtttgttttatATGCCAAGTAtaggtaaaatgtaaaatactcTATGTGCTTTTGATTGCTTTTTCTGTGAAAATAATGCCTGGTCTCTTTAAGAAATGTCTGGTAATTGTAGCACCAGCACATGGACTAGCCTGATCGCTGCACATGCGtcattattcagtgttttctctAGCCAATTCAATCTTGCTTTTGAACTCAGTCCACTGTTTTAGGAATCATGTACAATTCTACCTCTCTTTGAAGGGTAGACCCTGCATTTCATTCAGTGTTACCCCAATGTTTTTTTCTATggacattaatacattatttttatgtatcaGCA

Function

symbol description
ctdspl2a Predicted to enable phosphoprotein phosphatase activity. Orthologous to human CTDSPL2 (CTD small phosphatase like 2).

NR:

description
PREDICTED: CTD small phosphatase-like protein 2-A

GO:

id name namespace
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K17616 CTDSPL2; CTD small phosphatase-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919907.2 True 2990 mRNA 0.44 13 17237113 17248412

Neighbor

gene id symbol gene type direction distance location
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding downstream 2256 17140415 ~ 17234857 (-)
etfa etfa,LOC107712526,LOC107557988 coding downstream 108829 17113754 ~ 17128284 (-)
c2cd4a LOC108275248,LOC108433606 coding downstream 347106 16888337 ~ 16890007 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding downstream 436745 16567295 ~ 16800368 (-)
LOC113530224 NA coding downstream 483832 16753176 ~ 16753281 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding upstream 1126 17249538 ~ 17255164 (-)
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding upstream 35612 17284024 ~ 17291324 (-)
tjp1b LOC108274984,LOC108414298 coding upstream 74786 17323198 ~ 17388941 (-)
duox duox1,LOC108436899,LOC107712499,LOC106561775 coding upstream 156998 17405410 ~ 17420203 (-)
apba2a LOC108275011,LOC106584731 coding upstream 176495 17424907 ~ 17434437 (-)
G150130 NA non-coding downstream 86632 17125414 ~ 17150481 (-)
G150139 NA non-coding downstream 88505 17147901 ~ 17148608 (-)
LOC117597939 NA non-coding downstream 159028 17075246 ~ 17078085 (-)
G150036 NA non-coding downstream 184601 17028117 ~ 17052512 (-)
G150089 NA non-coding downstream 217930 17018956 ~ 17019183 (-)
G150237 NA non-coding upstream 117038 17365450 ~ 17365787 (-)
G150284 NA non-coding upstream 192461 17440873 ~ 17444825 (-)
G150310 NA non-coding upstream 255874 17504286 ~ 17504936 (-)
G150340 NA non-coding upstream 302678 17551090 ~ 17574660 (-)
G150424 NA non-coding upstream 350376 17598788 ~ 17599194 (-)
LOC113529460 nrg4 other downstream 178207 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1008779 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1245019 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1517538 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2008128 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 956239 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1054730 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1056226 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1105562 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 1176907 18425319 ~ 18428973 (-)

Expression


Co-expression Network