si:ch73-330k17.3 (LOC108275018,LOC108436903,LOC107688943)


Basic Information

Item Value
gene id si:ch73-330k17.3
gene name LOC108275018,LOC108436903,LOC107688943
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17445361 ~ 17447657 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919921.2
TGGATGGGGTGGATGTTTTGTAAGTGTTTGTAGTGatctttatataaaaaaggGAGTTGATGGTTCAGGCCACTTCATGTCATCATGGGTTACAGAGCATTACTTTTTTTGATTGTGGTTTGTGCTGCAACAACTGCGACGTCCAGTTTAGAGAGCACCAGATCTGGATCGCAGATTCTTCAAGCCTTGCACTGTCCACCCTGCGAGCGCATCCACTGTTCGCCCCGCAGAGCGCTGAGGCTCCAGTGTAAGGGGGGTGTTACTACAGGCGTCTGCGGCTGCTGCCCTGCATGTGCCAAACAAGCCGGAGAGAGCTGCGGAGGAACATGGGACTACCTGGGGAAGTGTGATGAaggcttggtgtgtgtgtaccaggAATCTACTGAGAGCAAGCCAGAAGCAGAGCACAAGGGGATCTGCAAGTCAGTACTTGACATCCTTGAAAGAGACGCTTGTCGTCCAGACTGTACATGGGAATTCTGCCAGGCAAACCCCAATGAAATCTGCTCAGCCAGGTCTGTGTCAGTGGAAAAGCGTGAGTGTGGAGGTTTCTGTCAACACACCACCTGCTCCAGCTGTTTGGTTCTCAGGCGTCCAGCGTGTTCGCAGGCTTGTGCTCAAAAAGACCACGTCTGCCTGCATCGTTTCGGGAGGTGTGTGCACAGCCACCTGGAAGCACAAACACAGGCAGCCTGCCACCAAAACCTGCAGAGCAACAATGAGGGCTACTTCATGTGTTTGGCTCCTGCTTGTCCAAATGCAGCAGAATAATTATGCATTTGTGGAGGATCTGCTCCAAAGTGATCTAGGTTTAAAAGGTAGCATATTAAGGCAGCTAttttttgtatgatttttttgtaaCCTTTGTGAATGCAGATTACAAATGAAAGAATAATTATGTGaatgttttatgtaatattacTTTGATCAGTTTATTCAGTTTGATTTGTTCCTGTGCATTTGTATGTATAATTTCTAGAACATTAGCTATATGATCAGCTGTTTGCATTCATACAATGCCACAGTTGACtcaagtattaaataaaatggattttcttttataaataaatttagggAA

Function

NR:

description
PREDICTED: cysteine-rich motor neuron 1 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919921.2 True 1078 mRNA 0.45 4 17445361 17447657

Neighbor

gene id symbol gene type direction distance location
eif3ja eif3j,LOC108275014,LOC107688938,LOC107739069 coding upstream 1687 17437234 ~ 17443674 (+)
duox2 duoxa1 coding upstream 21896 17420208 ~ 17423465 (+)
zgc:101540 slc27a2,LOC108414297 coding upstream 122503 17316673 ~ 17322858 (+)
cep152 cep152 coding upstream 130119 17298741 ~ 17315242 (+)
cops2 cops2,LOC107557994,LOC107589327 coding upstream 147141 17291387 ~ 17298220 (+)
scamp5a scamp5,LOC103363822,LOC107395508,LOC108436905,LOC102221013,LOC103466429 coding downstream 11833 17459490 ~ 17467526 (+)
LOC113529594 LOC108275015 coding downstream 21263 17468920 ~ 17473913 (+)
LOC113529627 NA coding downstream 33805 17481462 ~ 17489363 (+)
ubl7a ubl7a,ubl7,LOC108274434,LOC108436908,LOC107703185 coding downstream 43178 17490835 ~ 17496461 (+)
LOC113529626 LOC108275292,LOC108436907 coding downstream 51660 17499317 ~ 17504896 (+)
G150261 LOC108275011 non-coding upstream 10984 17430143 ~ 17434377 (+)
G150152 sqrdl non-coding upstream 190024 17253667 ~ 17255337 (+)
G150148 NA non-coding upstream 208415 17236641 ~ 17236946 (+)
G149729 NA non-coding upstream 871489 16540599 ~ 16573872 (+)
LOC117597920 NA non-coding upstream 971133 16460380 ~ 16474228 (+)
G150268 NA non-coding downstream 9263 17456920 ~ 17457135 (+)
G150407 NA non-coding downstream 254897 17702554 ~ 17702758 (+)
G150590 LOC108274445 non-coding downstream 385109 17832766 ~ 17840449 (+)
G150592 NA non-coding downstream 463980 17911637 ~ 17912583 (+)
G150609 NA non-coding downstream 466968 17914625 ~ 17915242 (+)
LOC113529564 ano9,LOC108442698 other upstream 1622770 15807990 ~ 15822591 (+)
svip svip other upstream 1720270 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 1792677 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 3616030 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 3668490 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 386580 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 734897 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 1227353 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 1273938 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 1300170 18747827 ~ 18796259 (+)

Expression


Co-expression Network