LOC113530162 (LOC108274540,LOC103046250,LOC108428357)


Basic Information

Item Value
gene id LOC113530162
gene name LOC108274540,LOC103046250,LOC108428357
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19237672 ~ 19240638 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919967.2
atgtcaggttTAAATTTCACCATTCCTTTCTCGGTTGACTTTACAAGCACGGgagattttttcattttcatttaccaCATCGTGTTCGCCACATGCGCGGCTCTGCTCGCGGGCTCTGTGGTTCTGGGTATCCTGTGCACCCGGGCGCTGCGCCAGCAGAACCGCTTCATCTTCATGCTGAACACCAGCATCAGCGACACCCTCACCGGCTTCTCCGTCTATTACCTCGGCCTCTTCGACGTGCAGGAGGGTTATCCATCCAGAAACAGCACCTTTTACATTTTGCCCTCGTTTTTAGGGGTGAACGTGATGACGTTTCTGTTCGCGCAGTTTGACCGCTACTTGGCAGTGGGTCACCCGTTCTTTTACAACCGCTTCATTACGCGCTGGTTTGTCATCGCGTGCTGTGTCTTCTGCTGGGTGTACACCTACTTAATCCTCACTATTCAGAACGTTTTACCAGTTGCACAAGCGGTCAAACTGAGCGCCTTCGGTGTCATGACTTTGCAGATAATAGTTGTGCTCAAAGTCTTGATGACCATTAAGTTGTACATCATAGCCAAACACCAGCTCGGACGCGAGGCGCCCAGCCcggagagagacagcaagaagGAGTCACTGCGCCTCATTGTGTTCGTGGTGATTTGCTTTTTGTCGCTGTGGTGTCCCTCCTTCGTGAATATCATGGTCAGATATCTGTCAAACGGAGGGCTGCGCTTTAGGAACGAAGCGACCAACGCGTTTGCCATCATGGCGCGCTTTAACGCGCTCAGCACTCCTGCGCTTTACATATGGGGCAGTCCTGCTCTGCGCACTGCTGTGTGGAGCACGGTGTGGAGAAGAGTGTGTACACTGTGCCACAACAGGACTACAAGAGTGTTCAGCATGAACATGAAACCAGCGAAAGATAGAGTGCTGAGCATCTCACAGAGCTCGAGGGACATGTGAACGGCGAAAGCGGGAGACAAAACCAGACGAAGGGCTAATCATTACACGACCAGGCCTGGATTAGACTGGTTTGCCTATAATATTTCAAACTAAATGTTCAGATCAATGTTCAAGTTCTTTTTATATAGAAAGGCACTTGCTCTATATGGTTTCGCACAGCACGTCAAATGAACAAGGTTTCTGTGCAgctatattacactacactgacTGTGacttatttgtaaataaacacttcggaaaaaaaagtttaaaattagaacccttaatggttcttCAGTTATCCCTCTGCAGGGGTgtgattggacacccctgcctTAAAGGGTATGTGTACgaccctacaacaaagtgtttatctttttaggaagctaaggAACATTAACTATACAAGGTACATTTTGAAGAACCTTTTGTCTAAAAATTCTGTGATcaagtaattaaaaatttaaaaagcaaatgacttgagttagatttttttttgagaaaatgtatttctttttctattcaATTAATACAGTCACAGCAGAATATTTGCACAATCTGAACATGATGATAGTAGTCTTTAGctgtgatgctgaatgtaaatgTGAAGCCAAAGATggttctttaaaataaacactaattaaaaaaagaaagaagatatataaaaagtttagtttgtgtttaacaCATT

Function

NR:

description
PREDICTED: glucose-dependent insulinotropic receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919967.2 True 1618 mRNA 0.44 2 19237672 19240638

Neighbor

gene id symbol gene type direction distance location
prnprs3 NA coding upstream 11256 19221929 ~ 19226416 (+)
incenp incenp,LOC107701072 coding upstream 21325 19204494 ~ 19216347 (+)
ccdc77 ccdc77,LOC107754361 coding upstream 62568 19167269 ~ 19175104 (+)
LOC113529841 LOC108274949,LOC108428426 coding upstream 75524 19154291 ~ 19162148 (+)
zgc:153293 LOC108274949 coding upstream 83554 19149067 ~ 19154118 (+)
thoc5 thoc5 coding downstream 29056 19269694 ~ 19280582 (+)
chid1 chid1,LOC107674841 coding downstream 45147 19285785 ~ 19292110 (+)
mov10l1 mov10l1 coding downstream 190788 19431426 ~ 19446347 (+)
szl LOC108274651,LOC108428364 coding downstream 208905 19449543 ~ 19451833 (+)
dbx2 dbx2 coding downstream 216111 19456749 ~ 19464228 (+)
G151395 NA non-coding upstream 9779 19226649 ~ 19227893 (+)
G151134 NA non-coding upstream 126699 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 239740 18955049 ~ 18997932 (+)
G151093 NA non-coding upstream 291730 18945275 ~ 18945942 (+)
LOC113530068 NA non-coding upstream 616851 18601539 ~ 18620821 (+)
G151417 NA non-coding downstream 77348 19317986 ~ 19393161 (+)
G151419 NA non-coding downstream 153236 19393874 ~ 19397489 (+)
G151421 NA non-coding downstream 157640 19398278 ~ 19400388 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 162671 19403309 ~ 19403657 (+)
G151447 NA non-coding downstream 163334 19403972 ~ 19404398 (+)
faap24 faap24 other upstream 112471 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 441413 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 512986 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 554244 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 1053639 18182554 ~ 18184033 (+)
G151401 NA other downstream 19986 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 82693 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 421205 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2811976 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2836211 22076849 ~ 22078496 (+)

Expression


Co-expression Network