usp3 (usp3,LOC107659494)


Basic Information

Item Value
gene id usp3
gene name usp3,LOC107659494
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16049084 ~ 16060168 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919968.2
GGGGTCACCAGCGTTTCAAGCGTTTCGACACACTGCATAGGTTTATTAAGGGACGGGTTCAATCATTTAAAAGCTCCATAGAACTTATTCTCCGCCAGCACTGGTTTGCGGAGACTCATCATTCATTTAATAGCCAacattgtgtttatgtgtagtCTAACGATAGGAAAGCATTTGGCGGTTTTATACGGTATCATTAAAGCACCATATTTGTCCCGCTTGTGGACTCTGCGACCCTGCTGAACCCGTGACGTCATTAGATGGCGCCTCTTCCCCGTCGGCTCGATACCGCTTTCTGTGGCTAGCTCTTCTTGTCATGGAGTGTCCTCATCTCAGCTCCACGGTGTGTGTGGCGGTGGATCCCTCCCGCTTCCCTCACGGCTCACCTTCTTCATGGTGCTGCAGTGTTTGCCGGTCAAATAAAAGTCCTTGGGTTTGCCTCACCTGTTTGAATGTGCATTGTGGAAGGTATGTCAATGGCCATGCTAAGAAGCATTTTGAGGAGGTTCATTGTTCACCAACTGGACAGAAGAAAACAGAGAAGTTTCAACAACATTCTGTGTGCATGGACTGCAGCAGTTATAGTACATTCTGTTACCGCTGTGATGACTTTGTGGTGAACGACACCAAACTGGGCCAGGTGCAGAGGGTGAGGGAGCATCTTCAGAGTTTGGAAAACTCTGTGATGAATTCTgacagacagaggaaaagaaaactcTCAGGGAGTTCCTCCCCTGACCTCAGGCTGTCAGCAGATGGGGAAGGCCCTCCAGCTCGGAGTGCCACTGGCCTCCGGAACCTGGGCAACACGTGCTTCATGAACGCCATCCTCCAGTCTCTTGGTAACATTCCTGAGTTTAGTTGCTATTTTAAAGACTTGCCGGCAGTGGCGCTGCGGAGTGGAAAAACTGCAGGAAGGAGAATGTACCACACCCGAAGCCAGGGGGACAGCAGTGTGTCCCTGGTAGAGGAGCTCAGGAAAACCCTTTGTTCCCTTTGGCAGGGAAGTCAGACTGCCTTTAGTCCAGATGCTCTGTTCTATGTCATCTGGAAAATAATGCCAAGTTTCAGGGGCTATCAGCAGCAGGATGCCCATGAGTTCTTGCGTTACCTACTGGATCACCTCCACAGAGAGCTGCAGGGCAGTAAGAACGGCTTGCCTGGGTCGAGCCTGCTCCCAGACAACCTTAACTCAGGAAGCAATTGCAGCATTAATGGGACTCCCACTATGGTCACTGCTGTATTTGGTGGCGTCCTTCACAATGAAGTAAACTGCTTGATATGTGGCACAGAGTCAAAGAAATTTGACCCATTTTTAGACCTTTCCTTGGACATTCCCAGCCAGTTTAGAGTAAAAAGGACAAAGGACCAGGAACCAGGGCCAACCTGCACGTTGAGTGACTGCCTTTCTAGTTTCACTGACCTGGAGGAACTCGATGAAACGGAGCTCTACATGTGCCATAAGTGTAAAAAACGACAAAAGTCCACGAAGAAATTCTGGATCCAGAAACTGCCTAAGGTCCTGTGTTTGCATCTAAAGAGGTTTCACTGGACAGCTTTTCTAAGAAATAAAGTTGATACCTATGTGGAATTCCCATTGCGAGGCCTTGACATGAACTGCTATTTACTGGAGTCTGAAACCAGTCTCACTGAGAGTTGCCTGTATGACCTTGCTGCAGTAGTGGTGCACCATGGATCTGGGGTGGGATCAGGTCATTACACAGCGTATGGTCTTCATGAGGGCTGCTGGTATCACTTTAATGACAGCACTGTGACTGTAGTCAGTGAGGAGACAGTAGCCAAAGCCAAGGCCTACATTCTCTTCTACACAGAGCGGACAGAGCAGGACAACATGGGCTCCGTGACCAAGCCGAAGCTTTAATCAGCCTTACTGTACCATGAAGCCTTCAGAATGATAGTCCACCTTTCCTGCACACAGTTCCACGCTGAGCTTCAGTTATTATTTCACCCGTAGCACCACCATCACACCTCAGTAAAAACTAAATGCTGCTGTGTTCATTATATTAAGAAAACATTCCTAATGTTGCCTTTCATTGTTTTTGTCCAAAGGCCATCTTGTGTACTGGTGGACAGTGTTGCAGAAACTGGATCAGATGAAATGACAGAAAGTGTTgtaattgtttaataatgtgTATATCAGATTTTGGCCACCTCTTGTTTTAACATTAGATGACTTCGGTTTCATATAAAggtttttatgtaaatgaacTAAATTTGAGTATTTTCTTACTGCTGTTTGTTGGGTTTGAGGCATTTCTAACTTGAAACTTGAACAATCATAATTTGATGTTTCCTTTTCCCCTTTGTATTGCACAGGTAGTTTACTTTTACAAACAGTATCACCTCATAAATGTGAAAAGGACATTTGAAGAAAGGGAAAATGTTGGGTCCATtacattttgattatttatacTGTTTTACTGGGAGTAGTCATACCTCTTGCTATAAACCTTGATTCTACCATCATGACATTTGAGCACTCATGATTTTATGTGAATGTTTATAGAAGCACTAAAGAGATGTGAGTTATAAAAATGtagtcagtgtttttaaaaacattgcattGAAGTGCAACAATAATCTCAGATCTTCAGTATGACACTGGAGTGAAGTTGAAGTCTTTCACAGTCTCATGTGAATCTTGTGATAGGTAAGAGAATGGAGTACTTTGTTTTCTCCAATTGTTTCCTACTCATGAAAAGCACCCATttcaaatgttcattttttcatgATGGGaatggtttatttaattttggcATGCACCGTAGTTTCTGCTGTAACACTGCTTAAAATGATGCATCAGTAAACACTTTTCCAGCAAGTTACACTTTTA
>XM_026919969.2
CTATCTTTTATTATGGTGGTTGCAGtgacaaaagaaacaaacagtCCGGGCAAGCAAGTTAGCTTAATTAAATCCGATTTAGTGTAATTTGGTGTGTTTAGTGTATTTAGCAGCGGTTGGGCTGAGCTTGTGTTCGGACCTTTATGCTGTGAGCTAGCGCGCTGGCTAGTCCACTCACCCCGCCAGCTAACGGCATTTTCTCTGCTGAGTTGATTCATTATCTGTCCTGACTCGACAAGCTAGCTTTATCTAAATCTGGGGGTGCAATATCTAGCAGAAAAGCTTCAGTTCTTATTTTCTTGGTCTCCTAGCTAGCTCTTCTTGTCATGGAGTGTCCTCATCTCAGCTCCACGGTGTGTGTGGCGGTGGATCCCTCCCGCTTCCCTCACGGCTCACCTTCTTCATGGTGCTGCAGTGTTTGCCGGTCAAATAAAAGTCCTTGGGTTTGCCTCACCTGTTTGAATGTGCATTGTGGAAGGTATGTCAATGGCCATGCTAAGAAGCATTTTGAGGAGGTTCATTGTTCACCAACTGGACAGAAGAAAACAGAGAAGTTTCAACAACATTCTGTGTGCATGGACTGCAGCAGTTATAGTACATTCTGTTACCGCTGTGATGACTTTGTGGTGAACGACACCAAACTGGGCCAGGTGCAGAGGGTGAGGGAGCATCTTCAGAGTTTGGAAAACTCTGTGATGAATTCTgacagacagaggaaaagaaaactcTCAGGGAGTTCCTCCCCTGACCTCAGGCTGTCAGCAGATGGGGAAGGCCCTCCAGCTCGGAGTGCCACTGGCCTCCGGAACCTGGGCAACACGTGCTTCATGAACGCCATCCTCCAGTCTCTTGGTAACATTCCTGAGTTTAGTTGCTATTTTAAAGACTTGCCGGCAGTGGCGCTGCGGAGTGGAAAAACTGCAGGAAGGAGAATGTACCACACCCGAAGCCAGGGGGACAGCAGTGTGTCCCTGGTAGAGGAGCTCAGGAAAACCCTTTGTTCCCTTTGGCAGGGAAGTCAGACTGCCTTTAGTCCAGATGCTCTGTTCTATGTCATCTGGAAAATAATGCCAAGTTTCAGGGGCTATCAGCAGCAGGATGCCCATGAGTTCTTGCGTTACCTACTGGATCACCTCCACAGAGAGCTGCAGGGCAGTAAGAACGGCTTGCCTGGGTCGAGCCTGCTCCCAGACAACCTTAACTCAGGAAGCAATTGCAGCATTAATGGGACTCCCACTATGGTCACTGCTGTATTTGGTGGCGTCCTTCACAATGAAGTAAACTGCTTGATATGTGGCACAGAGTCAAAGAAATTTGACCCATTTTTAGACCTTTCCTTGGACATTCCCAGCCAGTTTAGAGTAAAAAGGACAAAGGACCAGGAACCAGGGCCAACCTGCACGTTGAGTGACTGCCTTTCTAGTTTCACTGACCTGGAGGAACTCGATGAAACGGAGCTCTACATGTGCCATAAGTGTAAAAAACGACAAAAGTCCACGAAGAAATTCTGGATCCAGAAACTGCCTAAGGTCCTGTGTTTGCATCTAAAGAGGTTTCACTGGACAGCTTTTCTAAGAAATAAAGTTGATACCTATGTGGAATTCCCATTGCGAGGCCTTGACATGAACTGCTATTTACTGGAGTCTGAAACCAGTCTCACTGAGAGTTGCCTGTATGACCTTGCTGCAGTAGTGGTGCACCATGGATCTGGGGTGGGATCAGGTCATTACACAGCGTATGGTCTTCATGAGGGCTGCTGGTATCACTTTAATGACAGCACTGTGACTGTAGTCAGTGAGGAGACAGTAGCCAAAGCCAAGGCCTACATTCTCTTCTACACAGAGCGGACAGAGCAGGACAACATGGGCTCCGTGACCAAGCCGAAGCTTTAATCAGCCTTACTGTACCATGAAGCCTTCAGAATGATAGTCCACCTTTCCTGCACACAGTTCCACGCTGAGCTTCAGTTATTATTTCACCCGTAGCACCACCATCACACCTCAGTAAAAACTAAATGCTGCTGTGTTCATTATATTAAGAAAACATTCCTAATGTTGCCTTTCATTGTTTTTGTCCAAAGGCCATCTTGTGTACTGGTGGACAGTGTTGCAGAAACTGGATCAGATGAAATGACAGAAAGTGTTgtaattgtttaataatgtgTATATCAGATTTTGGCCACCTCTTGTTTTAACATTAGATGACTTCGGTTTCATATAAAggtttttatgtaaatgaacTAAATTTGAGTATTTTCTTACTGCTGTTTGTTGGGTTTGAGGCATTTCTAACTTGAAACTTGAACAATCATAATTTGATGTTTCCTTTTCCCCTTTGTATTGCACAGGTAGTTTACTTTTACAAACAGTATCACCTCATAAATGTGAAAAGGACATTTGAAGAAAGGGAAAATGTTGGGTCCATtacattttgattatttatacTGTTTTACTGGGAGTAGTCATACCTCTTGCTATAAACCTTGATTCTACCATCATGACATTTGAGCACTCATGATTTTATGTGAATGTTTATAGAAGCACTAAAGAGATGTGAGTTATAAAAATGtagtcagtgtttttaaaaacattgcattGAAGTGCAACAATAATCTCAGATCTTCAGTATGACACTGGAGTGAAGTTGAAGTCTTTCACAGTCTCATGTGAATCTTGTGATAGGTAAGAGAATGGAGTACTTTGTTTTCTCCAATTGTTTCCTACTCATGAAAAGCACCCATttcaaatgttcattttttcatgATGGGaatggtttatttaattttggcATGCACCGTAGTTTCTGCTGTAACACTGCTTAAAATGATGCATCAGTAAACACTTTTCCAGCAAGTTACACTTTTA

Function

symbol description
usp3 Predicted to enable thiol-dependent deubiquitinase and zinc ion binding activity. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human USP3 (ubiquitin specific peptidase 3).

NR:

description
ubiquitin carboxyl-terminal hydrolase 3

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11986 USP3; ubiquitin carboxyl-terminal hydrolase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919968.2 False 2854 mRNA 0.44 16 16049084 16060168
XM_026919969.2 True 2864 mRNA 0.44 15 16049391 16060168

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-73b11.8 NA coding upstream 930 16045575 ~ 16048154 (+)
trnav-aac_18 NA coding upstream 7837 16041175 ~ 16041247 (+)
neil1 neil1 coding upstream 34929 16009837 ~ 16014155 (+)
commd4 commd4,LOC107576274,LOC107757759,LOC107598913 coding upstream 40261 16005670 ~ 16008823 (+)
stra6 stra6 coding upstream 68839 15968543 ~ 15980245 (+)
fbxl22 fbxl22 coding downstream 920 16061088 ~ 16066983 (+)
LOC113529940 LOC108275177 coding downstream 32904 16093072 ~ 16106147 (+)
si:ch211-112g6.4 sh2d7 coding downstream 110076 16170244 ~ 16174834 (+)
lrrc61 lrrc61,LOC107752319,LOC107598843 coding downstream 142607 16202775 ~ 16206450 (+)
idh3a idh3a,LOC107757767,LOC107659502 coding downstream 149610 16209778 ~ 16219634 (+)
G149428 NA non-coding upstream 21065 16027607 ~ 16028019 (+)
G149427 NA non-coding upstream 22572 16024844 ~ 16026512 (+)
G149276 NA non-coding upstream 230716 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 294172 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 337167 15711013 ~ 15711917 (+)
G149552 NA non-coding downstream 194516 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 268088 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 278422 16338590 ~ 16341963 (+)
G149722 NA non-coding downstream 379538 16439706 ~ 16440054 (+)
G149723 NA non-coding downstream 385871 16446039 ~ 16449140 (+)
LOC113529564 ano9,LOC108442698 other upstream 226493 15807990 ~ 15822591 (+)
svip svip other upstream 323993 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 396400 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2219753 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2272213 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1774069 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2122386 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2614842 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2661427 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2687659 18747827 ~ 18796259 (+)

Expression


Co-expression Network