ndst1a (ndst1,LOC108274691,LOC108430959,LOC102795901)


Basic Information

Item Value
gene id ndst1a
gene name ndst1,LOC108274691,LOC108430959,LOC102795901
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 9918102 ~ 9986415 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919987.2
TACATATCCGATGCAAATGAAGATGGAGGCGCGTCATGAAACAAAAGCTCGTGCTGTAATGGAAGGAAAGATTGGACTAAACTATTGAAATCCGTGTTCTGTCCGCATTTTAATGGAGAATAACAAAGCCAGCACCTGGTACTCAAACATCTCTGGAATGAGGGACTACATTTGCACTGGTTGCTCTGACACTGCTTCAGCTCCTTCAAAAGCAGCAATAAGGAATGAATTTGAATGAAGGACAGGAAACAGGCTCAATCGGCTACTTATCACGCATTCGGGGAGCCTTGTGCAGACAAAATCATCTCAATTAAAGAAGCTGACGACAGACATGGTGACATAGTGGTGTTTAATATGGAGGAGACCAGCTCGTTGAACATCTCTTTTCTTCACTCACAATGTTTTTATACACAGACATAAATTGATGGTGTAAATGGAAAGAATCTGAGATTTGATTCCATTTTGCCTTTTTGcccctttgtttgtttgtttatttgtttatttttggtgGGGGGGGGGCATCCCCACGATGCTGGGTGCTGGCTGCGTGCGATGTTTCCTCCGCCAGCTCACGCTCCAGACCatctttctcctccttttcctcttgTGTACGCTCAGCGTCTTCATTTCCGCCTACTTCCTGTATGGCGTCAAAAGGGAGTTCGAGCCATCCGCTGGAGTCACGCCAGAAGACTGCGATGATGACATCACGCCATCGCGGCTCCTGCCGCTTCAGGATGAAGTGGGCAGAGATGCGGCGGCAGATGGCAGCCAGACCGACCCGGTGGTTCTCGTGTTTGTCGAGAGTCAGTACTCCCAGCTGGGTCAAGACATCGTAGCCGTGCTGGAGTCGGCCCGATTCCGGTACCATACAGAGATCTCTCCAGGAAAAGGAGACATGCCCACACTGACAGAGCGCGACCGGGGTCGCTTCGCTCTCATCATCTACGAGAACATCCTGAAGTACGTCAACATGGACGCCTGGAACAGGGAGCTGCTGGATAAATACTGTGTGGAGTATGGAGTGGGAATTATCGGCTTCTTCAAGgcgaaTGAGAACAGTCTCCTGAGTGCCCAGCTAAAAGGTTTCCCTCTGTTCCTGCACTCTAATTTGGGTCTAAAGGACTGCACCGTCAACCCAAAATCACCCCTCCTGCACATCACCCGCGCCCACGAGGTGGTCAGAGGTCCTCTGCCCGGTGATAACTGGACCGTGTTCCAGTCCAACCACTCCACATATGAGCCAGTACTGTTAGCAAAGACCCAGTCAGCAGAGAGCATGGGCCTACGTGCCGTCCTCCACACCTCTGTGGTTCAGGACCTCGGCCTGCATGATGGCATTCAGCGCGTGCTGTTCGGCCATGGCCTGGCCTTCTGGCTACACAAGCTGGTGTTTGTGGACGCTGTGGCCTTCCTCACATCTAAGAGACTCTCACTGTCCCTGGACAGATATGTACTGGTTGACATTGACGACATATTCGTAGGAAAAGAGGGCACCAGGATGAAGATGGCTGATGTAGAGGCACTGGTACAGACGCAGAACGAGCTGCGGAAGTCAATCCCAAACTTCACCTTTAACCTTGGCTTCTCAGGGAAATTTTACCATGCAGgtacaGATGAGGAGGATCTGGGTGATGACCTGTTGTTATCGTATGTTAACGAGTTCTGGTGGTTTCCACACATGTGGAGTCACATGCAGCCTCACCGCTTTCATAACCAGAGTGTGTTAGCTGAACAGATGCTCCTGAACAGACGCTTTGCTGAAGAGCACTCTATCCCCACACACCTGGGTTATGCAGTGGCTCCTCATCACTCAGGCGTCTACCCCATTCACGTGCAGCTCTACGAGGCTTGGAAGAAAGTGTGGGGCATCCGAGTGACCAGCACAGAGGAGTATCCTCATCTCAAACCAGCCCGCTACCGCCGCGGCTTCATCCACAGCGGCATCAGCGTGCTGCCGAGGCAGACTTGTGGTCTGTTCACTCACACTATCTTCTATAAAGATTACCCAGGAGGCCCTCAGGAGCTGGACAAGCTCATCAACGGAGGGGAACTATTCCTCACTGTATTACTCAACCCAATTAGTATCTTCATGACTCATCTTTCTAATTATGGAAATGACCGTCTGGGGCTGTATACTTTTAAGAAGCTGCTGCGTTTCCTGCAGACCTGGACTCACCTGAGGCTGCAGACCCTGCCTCCTGTCCAGCTGGCTCAAAAATACTTCAGCCTCTTCCCCTCGGACAGAGAACCACTCTGGCAGAACCCTTGCGAGGATAAGAGACACAAGGATATCTGGTCTAAAGAGAAAACATGTGATCGCTTCCCTAAGCTGCTTGTGATTGGGCCACAGAAGACAGGGACAACTGCTCTGTATCTGTTCCTGGGCTTGCACCCTGACCTCATTGGCAACTATCCCAGCAAAGAGACATTTGAGGAGATCCAGTTCTTCAATGGGCACAACTACCACCGAGGAATAGACTGGTACATGGAGTATTTCCCCCTCCCCTCCAACACCAGTTCAGATTACTACTTTGAGAAGTGCGCTAACTACTTTGACTCTGAATTAGCAGCAGCCAGAGCAGCAGCTCTCCTGCCTAAAGCTAAAATCATCACTGTCCTCATCAGTCCTGCAGAAAGAGCCTATGCCTGGTACCAGCACCAGAGGGCACATGATGATCCAGTGGCTATGAAATACTCTTttcatgatgtcatcactgcGCCCCGTGATGCTCCTGCAAGGCTGCGCGTCCTGCAGAGCCGCTGTCTGGTGCCGGGGTTGTATGCCATTCACCTTGAGCGCTGGCTTCAACACTACCACCCCagtcagATTATGGTTGTGGATGGGCAGATGCTGAAAACTGAACCAGCATTAGTCATGGATAAAGTCCAGAAGTTTCTGGGACTAATGAATACTGTGAACTACCACAAGATCCTGGCGTTTGATCCTAAAAAAGGTTTCTGGTGTCAGCTCCTGGAGGGAGGAAAGACTAAGTGTCTGGGAAAAAGTAAAGGAAAGAGATACTCAGATATGAAGTTAGAGTCCCAGCTGTTTCTAAGAGAGTACTACAGAGATCATAACATTGACCTGTCAAAGCTGCTCTACAGGATGGGCCAGGCTTTACCCACTTGGCTCAAAGATGAACTTCTTAACACTAGGTAGCTTTGAGCCATGTTCCTCCCCTCTGTCTGAGAATGGTATAGTCTCCAGCACCAGTCATTGGACTGAAGTGGAATAAACCATCGATATTGTCATGGGTGAGGAAGTCATGTCTCATTGGATTTCCCCTGTTGCTTTCAGAATATAAAGTGGTTTGTAAAATATTGCATCTCTACTTCTGCTTATTAAAACCCCCATGGGGTGGTATGTTATGTTACGGACTCATCCGAAGAGGAAATGGTACATCCTCTCACTATATCATGACAGATCTAAGTGCGTCATACTAGATATGGTATTTAACACTGGCTTCTCTCACTTCTTCTTGATAAGAGGAAGATTAAAACACATGAGATGTGCTGCGATAAGCCATGTCAAAAGACCAGGAACTTGATTCTTCCTTGTCTGCAAAGAATAAATGCACTGACCATGAAAGTATGGATGAACTGCCGTTTCTTCACCTCAGGACTTCAATGGTTTGGGGCCACAGGAGCAAAAGTGTGCATTTTAAAAGTGCCAGTAATTGAAGGCTGCGCTGGGGTTTTGTACAGTGTAACTACATTACGCtctttatatgtatatgaactAATTACAAAGCCCTTATTCAGCATGACTCTGACACAGTTCCACAGCGGCCATCAACACTAAACGAATGTGTCATAATTAAATGCAAAGCCTGACAggtattgaattttttttaataattgttaatGAGATCTCCCACAGCTAATTTCTCCAACACAGCTGAATACAGCTCTAACAGGTAACATTTCTTCAGGCTGGGTGTGTACTGCTCCACTGAAGATCAGAGCGCTTCAGCTGCCATGTATTGGAAAATTAGATGAAGTACAAGATCCAAAAAGTTAAGTTTATTAACACACAGAGAACCATGCTAATGGATTTGGAAATATATGAATATTGAATGTGGGGAATTATGTTAAATTCAACTGAGTTATTTATGTGGTGTTGCAATTTATCTTGGTTTGAGAATTCTATGAAATTGTATGAAAATACAagtaaaatattgttttgtaaaaaaatcttgaatagTACAGTTGACTGCAAATGTTTACACCCCTGCTGTTTAaaaaccattcattcattcatccatcctttCCTCACACATCCCTCCCTCACTCATCCCAACCCCTCCCTTTTTCGCACCAAGCTCTTCCTCATACATCTCAGCTCCTACATCACTTATCACAAACCCTACATCAATCATGCCAACCAATCCCCTTTTCATTCCAACCCCTACATCATTCATCCCAACCTCTCCCTCAAACACCATAACCTCATGCCAGCcactcttttct
>XM_026919988.2
TCGTGTTTGTGACTTTGGGGGCAGAACGGAGGAGGCGCGACTCTGTGAGTCTCAGCCAGGGCACTGCTGCTGAATTAGCTGCTGTTATGGAGTCCGACAGCGGCTCCAGGCTTTAAACGGGACATTTTGACGACCAGGTACTCAAACATCTCTGGAATGAGGGACTACATTTGCACTGGTTGCTCTGACACTGCTTCAGCTCCTTCAAAAGCAGCAATAAGGAATGAATTTGAATGAAGGACAGGAAACAGGCTCAATCGGCTACTTATCACGCATTCGGGGAGCCTTGTGCAGACAAAATCATCTCAATTAAAGAAGCTGACGACAGACATGGTGACATAGTGGTGTTTAATATGGAGGAGACCAGCTCGTTGAACATCTCTTTTCTTCACTCACAATGTTTTTATACACAGACATAAATTGATGGTGTAAATGGAAAGAATCTGAGATTTGATTCCATTTTGCCTTTTTGcccctttgtttgtttgtttatttgtttatttttggtgGGGGGGGGGCATCCCCACGATGCTGGGTGCTGGCTGCGTGCGATGTTTCCTCCGCCAGCTCACGCTCCAGACCatctttctcctccttttcctcttgTGTACGCTCAGCGTCTTCATTTCCGCCTACTTCCTGTATGGCGTCAAAAGGGAGTTCGAGCCATCCGCTGGAGTCACGCCAGAAGACTGCGATGATGACATCACGCCATCGCGGCTCCTGCCGCTTCAGGATGAAGTGGGCAGAGATGCGGCGGCAGATGGCAGCCAGACCGACCCGGTGGTTCTCGTGTTTGTCGAGAGTCAGTACTCCCAGCTGGGTCAAGACATCGTAGCCGTGCTGGAGTCGGCCCGATTCCGGTACCATACAGAGATCTCTCCAGGAAAAGGAGACATGCCCACACTGACAGAGCGCGACCGGGGTCGCTTCGCTCTCATCATCTACGAGAACATCCTGAAGTACGTCAACATGGACGCCTGGAACAGGGAGCTGCTGGATAAATACTGTGTGGAGTATGGAGTGGGAATTATCGGCTTCTTCAAGgcgaaTGAGAACAGTCTCCTGAGTGCCCAGCTAAAAGGTTTCCCTCTGTTCCTGCACTCTAATTTGGGTCTAAAGGACTGCACCGTCAACCCAAAATCACCCCTCCTGCACATCACCCGCGCCCACGAGGTGGTCAGAGGTCCTCTGCCCGGTGATAACTGGACCGTGTTCCAGTCCAACCACTCCACATATGAGCCAGTACTGTTAGCAAAGACCCAGTCAGCAGAGAGCATGGGCCTACGTGCCGTCCTCCACACCTCTGTGGTTCAGGACCTCGGCCTGCATGATGGCATTCAGCGCGTGCTGTTCGGCCATGGCCTGGCCTTCTGGCTACACAAGCTGGTGTTTGTGGACGCTGTGGCCTTCCTCACATCTAAGAGACTCTCACTGTCCCTGGACAGATATGTACTGGTTGACATTGACGACATATTCGTAGGAAAAGAGGGCACCAGGATGAAGATGGCTGATGTAGAGGCACTGGTACAGACGCAGAACGAGCTGCGGAAGTCAATCCCAAACTTCACCTTTAACCTTGGCTTCTCAGGGAAATTTTACCATGCAGgtacaGATGAGGAGGATCTGGGTGATGACCTGTTGTTATCGTATGTTAACGAGTTCTGGTGGTTTCCACACATGTGGAGTCACATGCAGCCTCACCGCTTTCATAACCAGAGTGTGTTAGCTGAACAGATGCTCCTGAACAGACGCTTTGCTGAAGAGCACTCTATCCCCACACACCTGGGTTATGCAGTGGCTCCTCATCACTCAGGCGTCTACCCCATTCACGTGCAGCTCTACGAGGCTTGGAAGAAAGTGTGGGGCATCCGAGTGACCAGCACAGAGGAGTATCCTCATCTCAAACCAGCCCGCTACCGCCGCGGCTTCATCCACAGCGGCATCAGCGTGCTGCCGAGGCAGACTTGTGGTCTGTTCACTCACACTATCTTCTATAAAGATTACCCAGGAGGCCCTCAGGAGCTGGACAAGCTCATCAACGGAGGGGAACTATTCCTCACTGTATTACTCAACCCAATTAGTATCTTCATGACTCATCTTTCTAATTATGGAAATGACCGTCTGGGGCTGTATACTTTTAAGAAGCTGCTGCGTTTCCTGCAGACCTGGACTCACCTGAGGCTGCAGACCCTGCCTCCTGTCCAGCTGGCTCAAAAATACTTCAGCCTCTTCCCCTCGGACAGAGAACCACTCTGGCAGAACCCTTGCGAGGATAAGAGACACAAGGATATCTGGTCTAAAGAGAAAACATGTGATCGCTTCCCTAAGCTGCTTGTGATTGGGCCACAGAAGACAGGGACAACTGCTCTGTATCTGTTCCTGGGCTTGCACCCTGACCTCATTGGCAACTATCCCAGCAAAGAGACATTTGAGGAGATCCAGTTCTTCAATGGGCACAACTACCACCGAGGAATAGACTGGTACATGGAGTATTTCCCCCTCCCCTCCAACACCAGTTCAGATTACTACTTTGAGAAGTGCGCTAACTACTTTGACTCTGAATTAGCAGCAGCCAGAGCAGCAGCTCTCCTGCCTAAAGCTAAAATCATCACTGTCCTCATCAGTCCTGCAGAAAGAGCCTATGCCTGGTACCAGCACCAGAGGGCACATGATGATCCAGTGGCTATGAAATACTCTTttcatgatgtcatcactgcGCCCCGTGATGCTCCTGCAAGGCTGCGCGTCCTGCAGAGCCGCTGTCTGGTGCCGGGGTTGTATGCCATTCACCTTGAGCGCTGGCTTCAACACTACCACCCCagtcagATTATGGTTGTGGATGGGCAGATGCTGAAAACTGAACCAGCATTAGTCATGGATAAAGTCCAGAAGTTTCTGGGACTAATGAATACTGTGAACTACCACAAGATCCTGGCGTTTGATCCTAAAAAAGGTTTCTGGTGTCAGCTCCTGGAGGGAGGAAAGACTAAGTGTCTGGGAAAAAGTAAAGGAAAGAGATACTCAGATATGAAGTTAGAGTCCCAGCTGTTTCTAAGAGAGTACTACAGAGATCATAACATTGACCTGTCAAAGCTGCTCTACAGGATGGGCCAGGCTTTACCCACTTGGCTCAAAGATGAACTTCTTAACACTAGGTAGCTTTGAGCCATGTTCCTCCCCTCTGTCTGAGAATGGTATAGTCTCCAGCACCAGTCATTGGACTGAAGTGGAATAAACCATCGATATTGTCATGGGTGAGGAAGTCATGTCTCATTGGATTTCCCCTGTTGCTTTCAGAATATAAAGTGGTTTGTAAAATATTGCATCTCTACTTCTGCTTATTAAAACCCCCATGGGGTGGTATGTTATGTTACGGACTCATCCGAAGAGGAAATGGTACATCCTCTCACTATATCATGACAGATCTAAGTGCGTCATACTAGATATGGTATTTAACACTGGCTTCTCTCACTTCTTCTTGATAAGAGGAAGATTAAAACACATGAGATGTGCTGCGATAAGCCATGTCAAAAGACCAGGAACTTGATTCTTCCTTGTCTGCAAAGAATAAATGCACTGACCATGAAAGTATGGATGAACTGCCGTTTCTTCACCTCAGGACTTCAATGGTTTGGGGCCACAGGAGCAAAAGTGTGCATTTTAAAAGTGCCAGTAATTGAAGGCTGCGCTGGGGTTTTGTACAGTGTAACTACATTACGCtctttatatgtatatgaactAATTACAAAGCCCTTATTCAGCATGACTCTGACACAGTTCCACAGCGGCCATCAACACTAAACGAATGTGTCATAATTAAATGCAAAGCCTGACAggtattgaattttttttaataattgttaatGAGATCTCCCACAGCTAATTTCTCCAACACAGCTGAATACAGCTCTAACAGGTAACATTTCTTCAGGCTGGGTGTGTACTGCTCCACTGAAGATCAGAGCGCTTCAGCTGCCATGTATTGGAAAATTAGATGAAGTACAAGATCCAAAAAGTTAAGTTTATTAACACACAGAGAACCATGCTAATGGATTTGGAAATATATGAATATTGAATGTGGGGAATTATGTTAAATTCAACTGAGTTATTTATGTGGTGTTGCAATTTATCTTGGTTTGAGAATTCTATGAAATTGTATGAAAATACAagtaaaatattgttttgtaaaaaaatcttgaatagTACAGTTGACTGCAAATGTTTACACCCCTGCTGTTTAaaaaccattcattcattcatccatcctttCCTCACACATCCCTCCCTCACTCATCCCAACCCCTCCCTTTTTCGCACCAAGCTCTTCCTCATACATCTCAGCTCCTACATCACTTATCACAAACCCTACATCAATCATGCCAACCAATCCCCTTTTCATTCCAACCCCTACATCATTCATCCCAACCTCTCCCTCAAACACCATAACCTCATGCCAGCcactcttttct

Function

symbol description
ndst1 Predicted to enable [heparan sulfate]-glucosamine N-sulfotransferase activity and deacetylase activity. Predicted to be involved in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process. Predicted to act upstream of or within several processes, including animal organ development; positive regulation of signal transduction; and protein sulfation. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Implicated in autosomal recessive non-syndromic intellectual disability.

NR:

description
PREDICTED: bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity molecular_function

KEGG:

id description
K02576 NDST1; heparan sulfate N-deacetylase/N-sulfotransferase NDST1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919987.2 True 4473 mRNA 0.47 16 9947306 9986415
XM_026919988.2 False 4472 mRNA 0.47 16 9918102 9986415

Neighbor

gene id symbol gene type direction distance location
slc35a4 slc35a4 coding upstream 22758 9894150 ~ 9895344 (+)
LOC113529465 NA coding upstream 24251 9889760 ~ 9893851 (+)
LOC113529571 csf1r coding upstream 44905 9851466 ~ 9873197 (+)
pdgfrb pdgfrb,LOC107754478,LOC107693052,LOC107690880 coding upstream 74689 9798337 ~ 9843413 (+)
LOC113530178 exosc3,LOC107750384,LOC107677356,LOC107697623 coding upstream 149743 9762575 ~ 9768359 (+)
bicc2 LOC108274692 coding downstream 10873 9997288 ~ 10018933 (+)
etf1a etf1,LOC108275025,LOC108430956 coding downstream 448532 10434947 ~ 10448212 (+)
fbxw11a fbxw11a,fbxw11,LOC108275024,LOC108430955,LOC105893085,LOC107655672,LOC107588312,LOC107660901,LOC107754486,LOC107747095 coding downstream 465932 10452347 ~ 10471279 (+)
fgf18a fgf18a,LOC108274431,LOC103029481,LOC108430953,LOC105893086,LOC107747128,LOC107660900 coding downstream 522398 10508813 ~ 10525910 (+)
pcdhb LOC108275060,LOC108430951,LOC107754491,LOC107747094,LOC107596358 coding downstream 568885 10555300 ~ 10557826 (+)
G145842 NA non-coding upstream 4271 9907797 ~ 9913831 (+)
G145841 NA non-coding upstream 11279 9903017 ~ 9906823 (+)
G145745 NA non-coding upstream 90819 9793274 ~ 9827283 (+)
LOC117598008 NA non-coding upstream 179591 9736278 ~ 9738511 (+)
G145711 NA non-coding upstream 186440 9726364 ~ 9731662 (+)
G145950 NA non-coding downstream 117570 10103985 ~ 10104188 (+)
LOC113530164 NA non-coding downstream 184300 10170715 ~ 10190193 (+)
G145966 NA non-coding downstream 221589 10208004 ~ 10211495 (+)
G146141 NA non-coding downstream 464261 10450676 ~ 10451023 (+)
G146168 NA non-coding downstream 540128 10526543 ~ 10526858 (+)
G145233 LOC107676291 other upstream 1075836 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 2451550 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 2961586 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 2965229 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 2966680 6951072 ~ 6951422 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 550836 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 567951 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 1308713 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1609084 11595499 ~ 11597970 (+)
G147542 NA other downstream 2930504 12916919 ~ 12917254 (+)

Expression


Co-expression Network