stra6 (stra6)


Basic Information

Item Value
gene id stra6
gene name stra6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15968543 ~ 15980245 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919989.2
CTTCATGCTGGCTGCTCAGACAGCAGCCCGCCCCTGGAAGGTCACCTAATCTCAGTAAGCCACAGGTGGCAGGATAGACTGGCTGCCCCTTATTTGCATTGttgttctctttattttcatatCTTTGTTATTTCTCTTCTTGCTTTATCTTTGGTTGCTTCTCTCCACTCGTCCAGTGTGGTGGTAAGCTAAATCTGAAAACGGAGGCCTGCTTACACTATTTTTCACAAGTCTCTGCTACAGCAGGATTGGAGCACCTGAGCAGAGTGAGTGAGATATATAAAGTGAAGGAGGGAGAGACCACAGGGAACACAGGACTTCACAATACCAAACTTTGaaaggagcttttttttttttccttgcacaACGTAAGTGAACAGGAGAAAAGTGTTGTGTGTCCCACGGGAAgagggaagagagaagagaagtcCACTCTGCCTGAATTCCTGGATTTCTTTGATAcactgataggtctgttttggtccTTAAACCAGGATAATGAGTGCAGAACTTGCAAAGGAAGACTACTATGATTATCCAGATTTGTATGATAATGCAGTACCCACCAAGCCTCCTGCAGAAGTTATCCCACCATGTGACTCAAAAGCTGATGAAAGTCTCTACCACATATGCATCACAGCCATATCCTTGGTGGTCATGCTGATCCTGGTGGTGTTGGCAAGGCAGCAGAAAGTTGTAGGTAGTCTAAAAGGAGTTCCAGCCTTACTCAGCCCTGTGAATTTTTTAGACCATACACAGCACAAAGCCTTGTCTGTGGCTGTGTTTGGGGTCCTTTTCTGTAGGCTTGTTGGAGTGATTCTATCCCCAAACCCACTGCCCTTTACCAAGGACCCTCAAAACAAAGAGTATTGGCTGATCCTTGCTCTGTTCTACTACCCTGCTTTGTACTACCCCTTGCTGGCCTGTGGCACGCTCCACATCACGGTCGGCTATGTGCTGGGCAGCCTTTTGTCATGGACACATTTTGGCATCCTCATCTGGCATAAAGTTGACTGCCCAAAAACACCACAGATATACAAGTACCATTCCCTGTTGAGCAGCCTGCCAGAGATTGCCTGTTTGGCATTTCTCAGTTTCCAGTATCCTCTTCTCCTGTTCAAGGGCTTTAAAGGAACAGAGAAAAGCGATCCctttgagGACCTAAAGAGCAGCTACTACACAGACTATGTAAAGAACATCCTCAAAAAGAAGAAACCATCTCAAGCCAGttCAAGCAGCTCTAAACCCAAGCTGACTGAAAGAATCACTTACGCACTCAAGTCTTACATATACACGCCTAAAGAGGtttttaggTTCCCTCTGAAGTTAGCCATCTCTCTGGTTGTGGCATCTATTGCTCTTTATCAGATGGCCCTCTTGCTGGTCATTGGAGTCGTGCCCACTCTCCAGATTGTCCGAAAAGGAGTGAACGAAGACATTGCATTTCTCCTGGCTGGCTTTAACATTATTCTGTCAGATGATCGGAAAGAGGTGGTTAAGATAGTAGCATACTACATGTGGTGTGTTGAGGTGTGCTATGTCTCAGCAGTAACCCTGACCTGCTTGGTTAATTTGGTCATGTTTATGAGGTCCATGGTCCTGCACAGGTCCAATCTGAGGGGGCTGTACCGAGGAGATATCTACAATGTGTATAACTGCCAGAGGAGCATAAGGCCGTCACGTCCTGCCCTGGTGTGCTGGATGGGCTACACCAGCTaccaagctgcatttatttgtcTGGGTATGGTCATCCAGACTCTGGTGTTCTTCATTTGCTTTCTATTCGCTGTCTTCCTCGTCATCATTCCCATCTTATATGGAAAGAATCTTGTGGTCTTCCACATCATTGGCAGAATGTGGCCCTTCTGGTTGACGTTGTCATTGACTGTGCTTATCCAGCACCTTACATCCAGATTCTTCTTCATTAAAAAGGAAGCTGGAACACAAGACCTAACTAACAGGGGGGGTCTGTTCCTTCTGACCTACCTGCTCTTTCCAGTCAATGTACTGGTTGGTGCATTGTTGGGAATTTGGAGGTTGGTCATCACAGCTCTTTTTAACATTGTTCATCTGGGCCGCATGGACATCAGCCTCCTCAACCGCAGTGTGGAAGCTTTTGACACAGGGTATCGCTGCTATGCTCATTATTTAAAGATTGAGGTCAGTCAGTCCCACCCAGTCATGAAGGCCTTCTGTGGGCTGCTGTTACGGTCTCCAAGCCAGGACAAAGGCACTGGAGATGCAGCACGTAATGCGGAGGAAGGAATTCAACTGGTTTCACAGGACAAGAAACAGAACAAGGTGCCCGATGCTAAGCAAGCACGTGGACACTGGCATCTGCTCTACACACTAGTGAATAATCCATCCTTGGTGGGGTCCAGGAAGCACTTTCAGCGACAGAGCTCAGAGAGTGTCCTGAACGGGACCCTCAAACGGAGCTCCAAAGAAGGCAGCAAAAAGGAGGGAGGCACCACAGCAGCCAgcaaagagggagagagacctGCATCTGAGGACTGAGACTGATAACACAGACTAAGAGAcaacacattctctctctgcctttattaaattatattagttATTGGacagattataataataatagtactgtTAGTGTCTGTGTAGAAATGAACTTTGTCTTGAATAAATGCCCTTATACCTTATAGTGCCTCAGGAAGAAGTATAGACTGTTTCCTTTTTTGACTGGATGGATTCACTCTTTCTTTTGtgattaaatgtttgttttttttcatttggtggTTTCTAGTGCAGGATTATCAGAAAATTTACATTGGCACTGAACTCCCACATGAATACTTGTGCACGGTTATACTGGCTATTTATGTATGATGATATGTTATGTATTTCTTTctgagtggttttttttttcatttccatgcTATGTTTCCTGTGCATTCATTACTGTCCTTGCCACCTTTGAGGAGAGATTAAAGATTAATTTGTTTGAAAATACTACcttttaatacaattttaataCATATAGTATAATCTATTTTTCTAGTTAATAAGTTTACAGTCATGCATATTTAGTTTAAGAAAATGTCTCATGTCAgttttgaagaaaaataataagcGGATTTTGCTGTGATTTAAACgattttgtgaaaataaataaatatataaataaataaaagcagtaatAAAAGCAATT

Function

symbol description
stra6 Enables calmodulin binding activity and identical protein binding activity. Acts upstream of or within chordate embryonic development and retinol transport. Is integral component of plasma membrane. Is expressed in several structures, including hindbrain neural plate; immature eye; nervous system; pleuroperitoneal region; and trunk. Used to study syndromic microphthalmia 9. Human ortholog(s) of this gene implicated in syndromic microphthalmia 9. Orthologous to human STRA6 (signaling receptor and transporter of retinol STRA6).

NR:

description
PREDICTED: stimulated by retinoic acid gene 6 protein homolog

GO:

id name namespace
GO:0009790 embryo development biological_process

KEGG:

id description
K23088 STRA6; vitamin A receptor/transporter (stra6) family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919989.2 True 3172 mRNA 0.43 17 15968543 15980245

Neighbor

gene id symbol gene type direction distance location
LOC113530122 cyp11a,LOC108442685,LOC106561846 coding upstream 63214 15897676 ~ 15905329 (+)
stoml1 stoml1 coding upstream 73089 15891653 ~ 15895454 (+)
nr2e3 nr2e3,LOC105892475,LOC107595245,LOC107589312 coding upstream 77804 15888107 ~ 15890739 (+)
hexa hexa coding upstream 86371 15874863 ~ 15882172 (+)
sigirr sigirr coding upstream 127036 15832179 ~ 15841507 (+)
commd4 commd4,LOC107576274,LOC107757759,LOC107598913 coding downstream 25425 16005670 ~ 16008823 (+)
neil1 neil1 coding downstream 29592 16009837 ~ 16014155 (+)
trnav-aac_18 NA coding downstream 60930 16041175 ~ 16041247 (+)
si:dkeyp-73b11.8 NA coding downstream 65330 16045575 ~ 16048154 (+)
usp3 usp3,LOC107659494 coding downstream 68839 16049084 ~ 16060168 (+)
G149276 NA non-coding upstream 150175 15771838 ~ 15818368 (+)
G149268 NA non-coding upstream 213631 15754665 ~ 15754912 (+)
G149248 NA non-coding upstream 256626 15711013 ~ 15711917 (+)
G149131 NA non-coding upstream 399056 15567836 ~ 15569487 (+)
G149091 cpne8,LOC108274474 non-coding upstream 484640 15483074 ~ 15483903 (+)
G149427 NA non-coding downstream 44599 16024844 ~ 16026512 (+)
G149428 NA non-coding downstream 47362 16027607 ~ 16028019 (+)
G149552 NA non-coding downstream 274439 16254684 ~ 16255314 (+)
G149574 NA non-coding downstream 348011 16328256 ~ 16328539 (+)
LOC117597940 NA non-coding downstream 358345 16338590 ~ 16341963 (+)
LOC113529564 ano9,LOC108442698 other upstream 145952 15807990 ~ 15822591 (+)
svip svip other upstream 243452 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 315859 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2139212 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2191672 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1853992 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 2202309 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2694765 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2741350 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2767582 18747827 ~ 18796259 (+)

Expression


Co-expression Network