si:ch211-107m4.1 (LOC108275330)


Basic Information

Item Value
gene id si:ch211-107m4.1
gene name LOC108275330
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 9745450 ~ 9755995 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919991.2
AGGTGATTGACCAATAAGCAATCAGGACGCTTTCTTGAATTTTCCTGAGCGACCAGCTGCTacgtgttgtgttgttttgtgtttatttttgatttttatatcAGCTAAGCCgctttaaatacatttacagaaGTTATCTGTAAATGCGACGGGCTGAGTTGTTAGTAGTTTATATTTAAACGCCAGGTCATTGCTGCCGGTCGCGATGTTGTTGGAGGACGTGAGGAAGCTGAAGGTGGCTGAGCTGCGGGCCGAGCTGCGGGATCGAGGGCTGGACCCTAAAGGACTGAAGGCCGAGCTGGTGGCTCGTCTCCTGTCAGCCATCGAGACTGCAGAACCTGACAGAAGTGTAGATTTAAAAGCTTTAGACACGGAACCTGTCCAGAGTACAGAGGAAAGCTCTAAACTAACACATCAGACTGAAACTCCAGCTGGGACAGATTCAGGAGACAAGCAGCAAACTTTAGATCACAATGAACCAGAGCAAATCAGGACAACAGCACGGTCTTGTGTCGATCAgagcacacagacagagaatgagCCAGCAGTCAGGATCTCCCAGTCAGTGTGCTGTTGTTCTAACAGGAGAGAAGAAGCAGGAGCAGAGCAGTTTAAAACCCAGTGTGTCCTCACCAGCAGTGCCAGCTCTGATGCCCATCAGGAGGAAGTCCAGTCCACACCACTGCACACCAGTCACCAGGTACCCCACATGGCGCCTGTCATAGCGGAGACTGGAACGGAAAAGCAGGATGAGTCTAGGAACGTCAGCAGACCTCACGGAGAGAGGGGCCGGGATTATTACGAGTTTAAAGAGGAGATTCAGTATATGAGagccaaaacaccAGAGCCCCATCCTGCGAGTGAGGATGAGATGGACATTGATGATGACACGGTTCGGCTAGATTCCTACAACAGCGACCTGCATTTTGAAGTGGGTGCGGACGGGACCAGCGGTCAGCCTTTACTCTGGGAGAAGTTCCCTCTGCTGCATTCAGGGTGTCGACTGACCCACGGCTTTACTCGCGGAAAAGTGGGATTCGAATTCAAGTATGTGAAGAGATTATCAGCAGCTACAGTTCCGAGCATCGACCCTGAGCCTTATGTCCTCAGAGTGGGCTGGTCTGTGGATGGCTCCAGCTTTCAgctaggAGAGGAGGAGCTCTCGTTTGGATTTGATGGAGCAGGCAAAGCAGTGACAGGAGGAAAGTTGGAAAAATTTGGAGAGCCATTTTCAGAGGGTGATGTCATCGGCTGCTATGCGttCATCAGCGATGGCGGAGAGACAGAGCTATCCTTTTCTAAAAACGGCCGCTTTCTCGGGGTGGCGTTTCGACTCTCTGGCTCCACCTTGGCAGGTCGTGCACTCTACCCACACGTCCTGTGCAAAAACTGCTCCGTTTCCCTGAACCTGGACTCTCAGGGTGTGACGTGGTATCCTGGACCTCCTGGGTACTGCCCTTTACCCATGCTTCCATCTGCACTTCGGCCTCAAGCTCCACTTCCTCCATCACACAGGAAGGACTGCGAGGTGCTGATGATGGTTGGCATGCCAGGTTCTGGAAAGAGCCACTGGGCTGAGAGCCACATGGCCAAGAACCCAGAGAAGCATTACAATTTGCTAAGCATAAACTATATCCTTCACTGCATGAAGcTGCCGAGCCAAGAACAGAAGAATGTGCTGCTGCAACAGGCTACACAGTGTCTCACACACCTCATCAGAATAGCAGCAACCAAAAAGAGGAACTTCATCCtggaccagGTGAACATTTACCCGTCTGCTCAGAGCCACAAGTTGCTGAGTTTTTCCGGTTATCAGAGAAAAGCGGTGGTGCTCGTCCCCTCGGATGAGGAGTGGAAGAGACGTCTGCAGCAGAAAGAGCAGAGCGAGGGTGCAGTGCTGCCTGAAATATCACTGCTAAAAAGCAAAGCGAGTTTCTCCCTCCCGGAGCAGGGCAGTCTCCTGGAGGACATCCTGTTTGTCGAGCTGTGCCGTGAAGAAGCCCAGAAACTCCTCTCAAGCTATAAAGAGGAGGCCACACGTCTCCTACCTGCACCTGCGAAACGCAACAGGAACAAAAAACGTCCCCATAAACgtcacatttctgcacatgGACTGAGCCAAAGCCGCAGTCAGTATGCACAGCAGTCACAGTGGGGATGCCATAAACAAAATGGATGgaatttttctgctttttctcagCCTTATGGCTGTAACAGTGATCCACAGCGGTACAGAGATTACTATCAGCCCTGCACCGAACAGTGGAACCTGGGTAACCAAAATCAGAGCTACTATGGTAACCAAAGCTATTATTTTGGCAACCAAGCTTTTTGGTAAATCATAACAGCAACCcaattaaatgatattttacatTCA

Function

NR:

description
heterogeneous nuclear ribonucleoprotein U-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919991.2 True 2377 mRNA 0.50 14 9745450 9755995

Neighbor

gene id symbol gene type direction distance location
LOC113529592 LOC108274483 coding upstream 147730 9587912 ~ 9597720 (+)
LOC117598038 NA coding upstream 177524 9566722 ~ 9567926 (+)
mars2 mars2 coding upstream 659452 9080058 ~ 9085998 (+)
fgf1a NA coding upstream 701239 9041657 ~ 9044211 (+)
nr3c1 LOC108275050 coding upstream 712189 8995920 ~ 9033261 (+)
LOC113530178 exosc3,LOC107750384,LOC107677356,LOC107697623 coding downstream 6580 9762575 ~ 9768359 (+)
pdgfrb pdgfrb,LOC107754478,LOC107693052,LOC107690880 coding downstream 42342 9798337 ~ 9843413 (+)
LOC113529571 csf1r coding downstream 95471 9851466 ~ 9873197 (+)
LOC113529465 NA coding downstream 133765 9889760 ~ 9893851 (+)
slc35a4 slc35a4 coding downstream 138155 9894150 ~ 9895344 (+)
LOC117598008 NA non-coding upstream 6939 9736278 ~ 9738511 (+)
G145711 NA non-coding upstream 13788 9726364 ~ 9731662 (+)
G145712 NA non-coding upstream 21751 9722227 ~ 9723699 (+)
G145368 NA non-coding upstream 641370 9103746 ~ 9104080 (+)
G145353 LOC108274676 non-coding upstream 676432 9066709 ~ 9069018 (+)
G145745 NA non-coding downstream 37279 9793274 ~ 9827283 (+)
G145841 NA non-coding downstream 147022 9903017 ~ 9906823 (+)
G145842 NA non-coding downstream 151802 9907797 ~ 9913831 (+)
G145950 NA non-coding downstream 347990 10103985 ~ 10104188 (+)
LOC113530164 NA non-coding downstream 414720 10170715 ~ 10190193 (+)
G145233 LOC107676291 other upstream 903184 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 2278898 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 2788934 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 2792577 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 2794028 6951072 ~ 6951422 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 781256 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 798371 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 1539133 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1839504 11595499 ~ 11597970 (+)
G147542 NA other downstream 3160924 12916919 ~ 12917254 (+)

Expression


Co-expression Network