LOC113530178 (exosc3,LOC107750384,LOC107677356,LOC107697623)


Basic Information

Item Value
gene id LOC113530178
gene name exosc3,LOC107750384,LOC107677356,LOC107697623
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 9762575 ~ 9768359 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919993.2
ACCCGGAAGTGTATCTACAGTTGTTTTCACACTACCCGCTTTTCACGTGGGTATGGTGAACgtgtatactgtagtatataATATTCTATACAATCATGAACATCTTACACTCTTGTTTTAAGGCTCAGATAGGTGAAGTGGTTTTACCTGGAGATGTCTTCCGGTTTGATGTGTCCTCTGTAGAGGAGGACAGCAGCGTTaaagctgaaaagatcatctgcGGACCGGGATTGCGCCGAAACGGAGACGAGATCCTGGTGTATAAAAGCGGTATCCTCCGCCATAAACAGCCCAATGTGTACTGGATCGACTCCCAGCAGAAACGCTATGTTCCAGTTAAAGGCGAGAGCGTGATCGGCATAGTGACGGCGAAGTCCGGGGACATCTTTAAAGTGGACGTGGGAGGCAGTGAGCAAGCCTCGTTGTCCTACTTAGCCTTTGAAGGGGCGACTAAAAGGAACAGACCCAATGTGCAGGTGGGGGATCTGGTGTATGCCCAGTTCATCATCGCAAACAAAGACATGGAGCCAGAGCTGGTGTGTATAGACAGCTGTGGCCGGGCGAATGGGATGGGAGTGTTTGGAGCAGATGGGTTTCTCTTCAAGGTGTCTTTGGGATTAGTGCGCAGGCTCCTCACACCTCAGAGCGAGATAGTGAAGGATCTTGAGAAGATCTTCCCCTTCGAGGTGGTGGTGGGTTTAAACGGCAGGGTGTGGGTAAAGGCTAAGACCGTTCAGCAGACACTGATCGTGGCCAATCTTCTGGAGAGCTGTGAGAACATGACGGCGCAGCAGAGACAGACTCTGTTCAAGAGAGTGGCAGAAGGCGCCCTCTAGTGCACGCACTGAGTGCTGGTTTCCATGGCGATTCCTCATTGTACAGGCTAAATGTGGCATGACTGTTCCAAGGCTTGAATTTGAACATTTAGtagaattttataaataatgtttgaaaagtACTGTGAGAGTGTACAATATACAAGTAGGACTCTGGATGGACTGCACTTCTATAATGTTTATGATTTGAGCAGCAGTTTGGGAtgcacacacagcagctcacagtcatcatttctgtattaacagatgttttttttttatt

Function

symbol description
exosc3 Predicted to enable RNA binding activity. Acts upstream of or within axonogenesis; cerebellar Purkinje cell layer structural organization; and chordate embryonic development. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in brain and eye. Used to study pontocerebellar hypoplasia type 1B. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 1B. Orthologous to human EXOSC3 (exosome component 3).

NR:

description
PREDICTED: exosome complex component RRP40

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0009790 embryo development biological_process
GO:0000178 exosome (RNase complex) cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03681 RRP40, EXOSC3; exosome complex component RRP40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919993.2 True 1098 mRNA 0.47 4 9762575 9768359

Neighbor

gene id symbol gene type direction distance location
si:ch211-107m4.1 LOC108275330 coding upstream 6580 9745450 ~ 9755995 (+)
LOC113529592 LOC108274483 coding upstream 164855 9587912 ~ 9597720 (+)
LOC117598038 NA coding upstream 194649 9566722 ~ 9567926 (+)
mars2 mars2 coding upstream 676577 9080058 ~ 9085998 (+)
fgf1a NA coding upstream 718364 9041657 ~ 9044211 (+)
pdgfrb pdgfrb,LOC107754478,LOC107693052,LOC107690880 coding downstream 29978 9798337 ~ 9843413 (+)
LOC113529571 csf1r coding downstream 83107 9851466 ~ 9873197 (+)
LOC113529465 NA coding downstream 121401 9889760 ~ 9893851 (+)
slc35a4 slc35a4 coding downstream 125791 9894150 ~ 9895344 (+)
ndst1a ndst1,LOC108274691,LOC108430959,LOC102795901 coding downstream 149743 9918102 ~ 9986415 (+)
LOC117598008 NA non-coding upstream 24064 9736278 ~ 9738511 (+)
G145711 NA non-coding upstream 30913 9726364 ~ 9731662 (+)
G145712 NA non-coding upstream 38876 9722227 ~ 9723699 (+)
G145368 NA non-coding upstream 658495 9103746 ~ 9104080 (+)
G145353 LOC108274676 non-coding upstream 693557 9066709 ~ 9069018 (+)
G145745 NA non-coding downstream 24915 9793274 ~ 9827283 (+)
G145841 NA non-coding downstream 134658 9903017 ~ 9906823 (+)
G145842 NA non-coding downstream 139438 9907797 ~ 9913831 (+)
G145950 NA non-coding downstream 335626 10103985 ~ 10104188 (+)
LOC113530164 NA non-coding downstream 402356 10170715 ~ 10190193 (+)
G145233 LOC107676291 other upstream 920309 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 2296023 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 2806059 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 2809702 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 2811153 6951072 ~ 6951422 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 768892 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 786007 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 1526769 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1827140 11595499 ~ 11597970 (+)
G147542 NA other downstream 3148560 12916919 ~ 12917254 (+)

Expression


Co-expression Network