LOC113530180 (LOC108274564)


Basic Information

Item Value
gene id LOC113530180
gene name LOC108274564
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16251344 ~ 16254496 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919995.2
ttttaaaggaaaatatagattatttttcttacttttgaTGTAATTGAGAGTATATGTTTGCTTGCTTTCTCCCCCTCTATCACCATGAATTTTCTTCTCTGGAATGCTTTGCAGTTTATGCCATGGAAATAAACCGTATGTAAACATTACACTCCACCATTTTTAATGctgtttcaaaatgaaaatgaagttAGCACTGCTATGCTGGACTGAGATTTGAGGTCTTTCCTCAGCCCCCTGTGGAGATAATATGTATGATGAAGATGGAAAGAAACTTCCCCCCTGCATTCCTGGTGCCTGGCTCACTCCAGCCATCATGGCCTGCTATTTGCTAGTGGCTAACATCCTCCTTGTCAACTTGCTTATTGCTGTCTTCAATAATACCTTCTTTGAGGTGAAGTCCATTTCAAACCAGGTGTGGAAGTTCCAGCGGTATCAGCTGATCATGACTTTCCACGACAGGCCAgtgcttcctcctcctctcatcATCTTCAGCCATATTTACATCCTCATCAGACGAATCTGCTGCCACTGTGGcaagaaaaaagagggagagcTGGATGAGAGGGACAAAGGACTGAAGCTTATCCTGAATTCTGAGGAGTTGAGGTGCCTGTATGAATTTGAAGAGGAGTGTGTGGAAGACTACTTCAGAGAGAAAGATGATGAGCAGCAGTCCTCAAATGATGAAAGGATAAGGGTGACATCTGAAAGGGTAGAAAACATGTCCATGCACCTGGAGGAGGTCAATGAGAGGGAGAACAATATGAAGGCTTCTTTGCAGACGGTGGATCTAAGGCTGGCCCAGCTGGAGGACATCTATTCTCGCATGATGATGGCCTTGGAGAAACTGGCAGGAATCGACCACAGTGAACTGAAGAGGATACACTCACGGACATCCTCTGTTAGTGGCTTGTCGTCGCTCCTCCGGACTGGCAGCATTAACAGCAATGATGGATACAGCCTTTATTGCTACTATATGGATGACTGTCCAGCTACTGAGGAAAAGGACGGGGCCATGTCAAGCCAACTGACAGTGGCAAATGTGAAGAAGCCATCGAACACCACAACTCTCAATCCAAATGATTATGGGCTGAATTTGGAGGTGGATGTTCCTGTAGGAAGGATCCGTCCAAACTCATGTGGGAACACCTGGATCCCCCGTTTTGAGAAAACACCTGAATCTATAGATCAGGGTGAAGAGGCCAAAGCAGCATGTGAAGCTCCAACATCTTTAGTCCAAAGGTCTAGGAGCACCAGCTTGTTCAGTTCAACTGCCAGAGAAAGTTTAATGCAGAGAGCCAAAGAGAATAATTCTCTTCAGAAAGCGATTGTCAGATCCTCAACTATGCGGCGATGGAGTGCTGGCTCTGAGTATAAATTGCAATCTAATCTTTTTGGCCAGCCACCTCCAGACATCCACATTATCAAACCCACAGAGACAAATGAAGCAAGTAAATCTGAGGGTCAGCTGAGACCAAGAGTTCCAAATATTCTCAGCACAGAGATGAGAACTCAAGAAGAAGAAGGCCAGATAGGAAGGAGTGATATTACACAAGAGGACAGAAAAGAGAATGGCTCAGAGGAAAGCCTAAATATGGAGGGTAATAcagaagaaagagacagagacccAACACAGACAGATGTAATATGGAGAAATTCAATTGAGGATGGAAGGATGAACTTGCATGAAGATATTCCTGACTCTTTTCATCTTCTGGTACCAGAAGAGAGAATGTTTCCACCAGGAAGATCCAAGAGCTGGAACACAAAATGTCGCAAAGCCTTGAGGGAAAGCGCAGACAAGCCCCGAGGCTCCAGCAGTGAGAGCAGCCTTTCATGTGGAAGTTCCCTTGGGAGGTCTGGAGAAAAAATTGGGAAAGTGTCAGGGAAGGaggagtgaaagaaaaaagatagacCTGAGGTCGGGAGATGAGACTGCTAATTAGGAGTAAAGATGATAAGAGATTGTTCTTTGTGTAccacaattttaaatataaattcatccattcatcttccgTATCAAGGTCAGAGTTTTCCTGGGAAACTCGTTGCAGGgtagaaatacaccctggatgagatggcATTTCAGCGCAGAGCATCAAGAACTTTTATGTAACAATAAAACAGCTGCAGCGTCATATCCACTTCCTAGGTAACAGATATTTGATGTTTTGTAGATAACCCTAAAtgtgtgattatgtgattaATAACTTCCAACATACGTTtctgtatattgtatgtattCTATATAATGTTATAACAGTTAGGCTTTATACAAGTAAAAATTAATACTCTTGCCTTACAGTTGGcttaaatgttattataatatGTTGTTTGACAGCCACAGATTTGAAAAGACATGCATAATATTcagtgttattaatattttattgttataatgGAAAACTGTTCTTATTGTCCctttaaatttaaagttatGGAACCACATGATTAATGTATATTTGTGCAAACTTTCATAACATTCAACATTCCTGA

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919995.2 True 2499 mRNA 0.42 4 16251344 16254496

Neighbor

gene id symbol gene type direction distance location
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding downstream 13187 16236143 ~ 16238157 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding downstream 52229 16180917 ~ 16199115 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 85345 16141596 ~ 16165999 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding downstream 110440 16121657 ~ 16140904 (-)
ca12 ca12 coding downstream 207492 16028155 ~ 16043852 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding upstream 2014 16256510 ~ 16262939 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding upstream 11066 16265562 ~ 16267986 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding upstream 71446 16325942 ~ 16362375 (-)
bnip2 bnip2 coding upstream 188959 16443455 ~ 16458395 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding upstream 286356 16540852 ~ 16546270 (-)
G149643 NA non-coding downstream 259 16249161 ~ 16251085 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding downstream 13236 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding downstream 19535 16230614 ~ 16231809 (-)
G149495 NA non-coding downstream 156169 16093072 ~ 16095175 (-)
LOC113529609 NA non-coding downstream 158414 16068429 ~ 16092930 (-)
G149649 NA non-coding upstream 151 16254647 ~ 16255486 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 55394 16309890 ~ 16317926 (-)
G149718 NA non-coding upstream 168170 16422666 ~ 16424604 (-)
G149836 NA non-coding upstream 206295 16460791 ~ 16461045 (-)
G149841 NA non-coding upstream 241675 16496171 ~ 16498461 (-)
acsbg1 acsbg1 other downstream 23010 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 259250 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 531769 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1022359 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1163284 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 798857 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1950155 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2048646 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2050142 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2099478 18353974 ~ 18364036 (-)

Expression


Co-expression Network