trpm1b (LOC108274564,LOC108433637,LOC107585966,LOC107750517)


Basic Information

Item Value
gene id trpm1b
gene name LOC108274564,LOC108433637,LOC107585966,LOC107750517
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16265562 ~ 16267986 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026919996.2
GTGCAGGTGAACCCCCCTCAGGAGAAGTGGACtgtactcaaacacacacaggtttccTCTACTGATGCTTATGGCACCATCGAGTTTCAAGGAGGAGGATTTGTCAACAAGGCCATGTACATCAGAGTATCTTATGACACCAAACCAGACAACTTGATGCACCTAATGGTGAAAGACTGGCATCTAGAGCTGCCCACACTCCTCATATCTGTTCATGGAGGCCTCCAGAATTTTGACATGCAGCCCAGACTCAAGCAGGTCTTTGGCAGAGGTCTGATTAAAGCTGCGGTGACTACAGGAGCATGGATCTTCACTGCGGGAATTAACACAGGTGTGATCCGCCATGTTGGAGATGCATTGAAAGATCATTGCTCTAAATCCAGAGGGAAGGTCTGTGCCATTGGGATCGCACCCTGGGGAATCCTGGAGAGCAAGGAGGATCTCATTGGAAGAGATGTGACCAGACCTTACCAGACAATGTCCAACCCTCTGAGCAAGCTGGCCGTTCTCAACAGCAGCCACTCCCATTTCATCCTGTGTGATAATGGCACATGTGGGAGGTATGGGGCAGAGGTCAAACTGCGTAGACAGCTGGAGAAGCACATCTCTCTGCAGAAGATTAACACCCGTTTAGGTCAGGGTGTTCCAGTAGTATGCCTGATCATAGAAGGTGGCCCAAACATGATCACTGTGGTCCTGGAGTGCTTGCGTGAGGAACCTCCTGTGCCCGTAGTGGTGTGTGATGGCAGTGGCCGAGCCTCAGACATCCTCTCCTTTGCCCACAAACACTCAGAGCATGAAAGGACAATAAGTGACGCTGCCCGAGACCAGCTACTAGTCAGCATTCAGAAGACCTTCAACTACAGCAAGAGTCAGTCACAGCAGATCTTCCTCATGATCATGGAGTGCATGAAGAGAAGGGAGCTGGTGAGTACATGTATCATGCAATTAGCAAGAAAAAGTCCAAAATGGACATTTTGTAgtctaaaatgtataaaatgcatttgtagatatttatttagaataGGTAAGTACATTGAAGAAGAAAAGATATTATACAGGTATATTTTTGGCCCCCAACATTGTAAATGCACCTTCAAAGGTACAGCACTGTTCCTTATAGACCAGTTAAGTACAGTTACGTTCATCTAACTAAAAGGACAAATTACATCACTGAAGATAACCCTAGGGACAAGTATTTGCatctttttctgagagtgtagtgTAAATATAGATATTCTATACATGCAGACCACACCTTCAACTAAATGACATAAAAAGTGACTGTAGAACTGTAGGGAGAATTTGGGCTGGAGGTCTGGGAAACATCATTGCtagtggagaaagagagaagttaTTTTCCAATGTATCGGATGTTAACTAGCAAGAAGGTAGAGCTTCAGGAATAGTTTTTCTCCAAAATATCAGTTATTTCTTAACTTCATGTATATTATACGTACACATACTGTAGATATCTTGCTATACTATATAACTGGTATAATTGCTTTGTAGCATATTGTTTTGATTAATGAACTGTTCcactaatttatttcattatcttAAAAATCTTTGttaaatgattatatttgtttgtatttca

Function

NR:

description
PREDICTED: transient receptor potential cation channel subfamily M member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026919996.2 True 1600 mRNA 0.43 6 16265562 16267986

Neighbor

gene id symbol gene type direction distance location
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding downstream 2623 16256510 ~ 16262939 (-)
LOC113530180 LOC108274564 coding downstream 11066 16251344 ~ 16254496 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding downstream 27405 16236143 ~ 16238157 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding downstream 66447 16180917 ~ 16199115 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 99563 16141596 ~ 16165999 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding upstream 57956 16325942 ~ 16362375 (-)
bnip2 bnip2 coding upstream 175469 16443455 ~ 16458395 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding upstream 272866 16540852 ~ 16546270 (-)
ice2 ice2 coding upstream 279339 16547325 ~ 16566002 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding upstream 299309 16567295 ~ 16800368 (-)
G149649 NA non-coding downstream 10076 16254647 ~ 16255486 (-)
G149643 NA non-coding downstream 14477 16249161 ~ 16251085 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding downstream 27454 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding downstream 33753 16230614 ~ 16231809 (-)
G149495 NA non-coding downstream 170387 16093072 ~ 16095175 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 41904 16309890 ~ 16317926 (-)
G149718 NA non-coding upstream 154680 16422666 ~ 16424604 (-)
G149836 NA non-coding upstream 192805 16460791 ~ 16461045 (-)
G149841 NA non-coding upstream 228185 16496171 ~ 16498461 (-)
G149854 NA non-coding upstream 344998 16612984 ~ 16614416 (-)
acsbg1 acsbg1 other downstream 37228 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 273468 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 545987 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1036577 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1177502 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 785367 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1936665 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2035156 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2036652 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2085988 18353974 ~ 18364036 (-)

Expression


Co-expression Network