pthlhb (LOC108274596)


Basic Information

Item Value
gene id pthlhb
gene name LOC108274596
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 15116022 ~ 15117778 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920008.2
AGGGTCTGCACAGTTTTGTGGATGAGCATGATGCTGAGGCAGTGGAGTTTTGCTGTGCTCTTACTAAGCATCCCTCTACCTGTCCAAGGGCAACCCATACATGCTCTCAGCAACAGAATgaGACGGTCAGTGAGTCAAGCCCAACTTATGCATGACCGAGGGCGCTATCTGCAGGACAGGAAGAGACGACTCTGGCTGCAGGAGCTTTTTGAACAGGTACACACTGCCAATGTGTGGGAAGCGCCATCCAGCAGTGGAGCCAACCTCCAGCATGTAACCTGGGGTGCCCAAGCTCCCAAAGCTGCCGCCAGCACCAAAGACTTTCTTCTGGACTTTCAGTTAGAGAGCACAGGCACAATCGACACCCTGCCACAGGAGACCAACAAAGAGCAGCCAGCTACCActaagagaaagaagagagtaTGTTTGGGGAAGTGGAGAGAGAGCAATAAACGAAGAGGATGGCCATGCTCAATACAAGTAGCGTTAAGAGCTCACTAAGCAGGGCAACTGGCAGTAAGTGAGGAGACGACTGTGAAACGAAGCAATGATGCTATCAAACACTCTGGATCATGGCCTCTAAACCTCTTTACCATAGATTAGTGTCTCTCATCAGCATAAAACACAGTGTCTCATAAGTATAATTCATTGTCCCATGCACTGTCTGACTCACAGTTACATACATTTACTATTTAGTCTTTAAGGAATACTGTTATTTTTACTGGAAAGGTGAATCTGATTATACAGTAAAAAGtctgtattttcattcattcattcttcttcagtaaccgctttatcctggtcagggtcccagtggatccggagcctatccagGGAATGCGAGGTGGAAAAAAACTAACGGGACGCCGGTCCATCACtgggtaccatgcacacacattaacatataGGAGCAATTTATCCTAACCAATCTGCCTTTGGgaatgtttctgggaggtgggaggaaatctGAGAATCCGGataaaacccacacaga

Function

NR:

description
PREDICTED: parathyroid hormone-related protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920008.2 True 994 mRNA 0.47 2 15116022 15117778

Neighbor

gene id symbol gene type direction distance location
LOC113529696 LOC108274568,LOC108428736,LOC104940688,LOC106573136,LOC103380577,LOC102196233 coding downstream 1157 15113679 ~ 15114865 (-)
cib1 cib1,LOC100536377 coding downstream 17108 15094752 ~ 15098914 (-)
LOC113529649 LOC108275035 coding downstream 72184 14996107 ~ 15043838 (-)
pamr1 pamr1,LOC107570358 coding downstream 334685 14748777 ~ 14781337 (-)
slc1a2b slc1a2,slc1a2b,LOC107572373,LOC107740049 coding downstream 377671 14711998 ~ 14738351 (-)
golt1bb golt1bb,LOC108275057,LOC108428784,LOC107676462,LOC105895666 coding upstream 27634 15145412 ~ 15149282 (-)
gpr22b gpr22,LOC108428781,LOC107754326,LOC107561157,LOC107701065,LOC107676451 coding upstream 46787 15164565 ~ 15170707 (-)
hbp1 hbp1,LOC107701066,LOC107754327 coding upstream 76540 15194318 ~ 15199670 (-)
LOC113530066 prkar2b,LOC108275286,LOC107676465,LOC107732287 coding upstream 82237 15200015 ~ 15217057 (-)
irx5b LOC108275041 coding upstream 164080 15281858 ~ 15285227 (-)
G148833 NA non-coding downstream 78560 15037225 ~ 15037462 (-)
G148612 pdhx non-coding downstream 433269 14681515 ~ 14682753 (-)
LOC113530044 NA non-coding downstream 600495 14513165 ~ 14515527 (-)
G148371 NA non-coding downstream 1094522 13998570 ~ 14021500 (-)
G148204 NA non-coding downstream 1337683 13776934 ~ 13778339 (-)
G148926 LOC108275086,LOC108428785,LOC106523631,LOC105938579,LOC107388471 non-coding upstream 9454 15127232 ~ 15128506 (-)
G148920 LOC108275086 non-coding upstream 12998 15130776 ~ 15132497 (-)
G148919 slc25a3,LOC107569351,LOC107754323 non-coding upstream 18348 15136126 ~ 15138007 (-)
G148992 NA non-coding upstream 213429 15331207 ~ 15331432 (-)
G149057 NA non-coding upstream 259425 15377203 ~ 15377406 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 27962 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 303317 14810004 ~ 14812705 (-)
LOC113529512 NA other downstream 1280267 13825782 ~ 13835755 (-)
trnar-acg_1 NA other downstream 1325477 13790287 ~ 13790545 (-)
syt8 LOC108275171,LOC103035847,LOC108428822,LOC107742052,LOC107595270,LOC107675261,LOC107549275,LOC107758745 other downstream 1650806 13457100 ~ 13465216 (-)
LOC113529695 NA other upstream 102192 15219970 ~ 15228985 (-)
LOC113529470 LOC108275326 other upstream 594215 15711993 ~ 15719575 (-)
islr2 islr2,LOC107662462 other upstream 863386 15981164 ~ 15992094 (-)
acsbg1 acsbg1 other upstream 1023341 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1935575 17053353 ~ 17058906 (-)

Expression


Co-expression Network