ccng1 (ccng1,LOC107745080)


Basic Information

Item Value
gene id ccng1
gene name ccng1,LOC107745080
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7439695 ~ 7444266 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920013.2
TTAGCTGCCGCCTGACGCCAAGGGTCAGGGGTGTGCCGGGCAGCAAGTAGAAACACTCGCTTTAAACATAATCTTCATAAATCTTTGCCTTTCACTTCTTTGTACcaagtttttatttgtgtttttgtacgtgttaaaatttatttcttgCGCTTTTAACTAAACCGACCAATATAAAAGAACATCCAAGaTGATTGACACAGTGAGTGGCGCAGAAGCTCTGCCCTTTGCACTCCAGCTGAAAGCTCTTCTGGAGCAGGAGGTCCGGTGTCAGCCTAAACTGTGTGGCCTCCGCGTCCTGGAGTCGGCACACGACAACGGCATGAGGATGACTGTGAAGATGAGGGATTTTGAGATGAAAGATCTGCTCTCTCTGACTCGCTTCTTTGGGTTCAGTGCTGAGACGTTCTCCCTCGCCGTGAGCCTCCTGGATCGCTTTCTGTCTCTGATGAAGATCCAGCCCAAACATCTGTCCTGTGTCGGCCTTTGCTGCTTCTACATTGCCGTGAAGACCTCTGAAGAGGAGAAGAATGTTCCTCTGGCTAACGATCTGATCCGAATCAGCCAGAACCGCTTCACTGTTTCGGACATGATGAGGATGGAGAAGATCATTCTGGAAAAACTCTACTGGAAGGTTAAAGCTCCTACTGCACTGCATTTCCTCCGATTGTTTCACAGCCACATCCAGGAGAAAATGGACGATGAAGGTAAAAAGATTCTGAACATTGAGAGGCTTGAGGCTCAGCTGAAGGCCTGCCACTGCTCCTTTGCCTTCACAAAACTAAggCCTTCATTGGTTGCGCTGGCTCTGCTGGCCCTCGAGGTTGAGGAGCAGCACGAATCAGAGTCCGTAGAAGCTCTGAGAGACGCAGTGAAGGATCTTCAGCACCAACTGACTATTAAAGATGGGgatttggtgtgtgtgagggagctCGTTTCCAAGTGCCTGATTGAATACTCTGCCACCAAGTGTTGGAAGCCCAACAGCCAGAGACTGCGCTGGATCATCTCAGGCCGAACAGCACGACAGCTGAAGCACAGCTACTATAAGATTGCTCACCTACCCACAATCCCTGAATCTGCCTACTAAAACCTGCAGTGTGAttggtctttctttttttttttttttttttaaaatctcttatGGAATGTAGTGATGTGTTTTGATGTTGGCTTCTGTACAGAACTTCTGTACTGAGAGTGAAGCTCTGTAAGGAAACCAActtttgtggcttttttttgtataaGCATGCAAGTATTCGTTTGACTTTGGAAGATCCTAGTCGAGTGTTTGATGGCCGTCAGCCAGAGGGTTGTACCACCCTGGTTTGACCGGCTCGAGTGTGTGTACTCAGCACGCTCATTTGAATCGGCGCCTGATTGCGCTGGTTGTTTAAAGCAGTTGAAAGTATTGAACCGCCTAGGTCCTCAGTCCACCATGTGGAAGAGGAGGGAGAAGGGTTTTGTGAAAAGGTGTACATCAAAGGAACCAAGAAATCGGGCCCAAAGCCCTTAACTCCCACCCTAGGTTGTTACTGTCCTCTAGCACACTCCTGCCCAAGGTGATTATATGATGttccttttcttttgttaaCTGCTCGTCTGTTCTTTTCAGGAGTGGTTCTCTAACATGACGTGTCGCTGAACATTAACACGACTGACCTTAACAGACTTTGCTTTTGTAGGTCAGGGTTTAAAATTCAACTTTACACAGGGTCTAATTGCTTAAATTGATAATTAGGACAAAAATAGTTTTCATTTTGGTTCTGCAGATCaaagcaaagttttttttttttttcccctcaggtACTACTGAAGAAAGACATGAGTTGCTTGAGTAAATGTGTAATTTGAT

Function

symbol description
ccng1 Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in mitotic cell cycle phase transition and regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including digestive system; immature eye; male organism; musculature system; and nervous system. Orthologous to human CCNG1 (cyclin G1).

NR:

description
PREDICTED: cyclin-G1

GO: NA

KEGG:

id description
K10145 CCNG1; cyclin G1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920013.2 True 1855 mRNA 0.46 6 7439695 7444266

Neighbor

gene id symbol gene type direction distance location
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding upstream 5465 7422869 ~ 7434230 (+)
sfxn1 LOC108275306,LOC108435595,LOC107668583,LOC107749734,LOC107594876,LOC107594919 coding upstream 21167 7401497 ~ 7418528 (+)
LOC113529540 cfap69 coding upstream 39270 7382078 ~ 7400425 (+)
LOC113529730 herpud2,LOC108275212,LOC105897640,LOC107686057 coding upstream 174999 7253320 ~ 7264696 (+)
LOC113547131 LOC108274606,LOC108435620 coding upstream 705781 6692793 ~ 6733914 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding downstream 23506 7467772 ~ 7525350 (+)
atp10b atp10b coding downstream 92069 7536335 ~ 7574229 (+)
trnaa-agc_3 NA coding downstream 164775 7609041 ~ 7609113 (+)
trnaa-agc_4 NA coding downstream 167504 7611770 ~ 7611842 (+)
trnaa-agc_5 NA coding downstream 170239 7614505 ~ 7614577 (+)
G144523 NA non-coding upstream 18875 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 172780 7239003 ~ 7266915 (+)
trnag-ccc_3 NA non-coding upstream 214147 7225478 ~ 7225548 (+)
LOC113530161 NA non-coding upstream 300323 7132850 ~ 7139372 (+)
G144444 NA non-coding upstream 477757 6958600 ~ 6961938 (+)
G144568 NA non-coding downstream 130842 7575108 ~ 7575491 (+)
G144661 NA non-coding downstream 131794 7576060 ~ 7576788 (+)
G144665 NA non-coding downstream 133862 7578128 ~ 7578377 (+)
G144715 NA non-coding downstream 241482 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 259815 7704081 ~ 7704763 (+)
trnaw-cca_12 NA other upstream 483179 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 486822 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 488273 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 640791 6796972 ~ 6798904 (+)
LOC113547145 NA other upstream 654258 6783516 ~ 6785437 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other downstream 3604 7447870 ~ 7466552 (+)
G145233 LOC107676291 other downstream 1397210 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 3092985 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 3110100 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3850862 11295128 ~ 11306318 (+)

Expression


Co-expression Network