parp16 (parp16,LOC107589319,LOC107595248,LOC107662480)


Basic Information

Item Value
gene id parp16
gene name parp16,LOC107589319,LOC107595248,LOC107662480
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17448608 ~ 17455078 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920032.2
CACACCCAGTGATTTTGAGCATAAACTAACACTAGCCTGGCCTGAACACAGCACACgccacaggagagagagaggctgggtGTAACTGGGTCATGGTCTCCATTTTCTATCCACGCCAAGGTCGAAAAACTGATCCTAAATCCTAAATCCTTTATCTGTGTTATCCTTGGTGGTATAGATGCTGCTTTTACATAATGAAGTAACGTTAAATAGTCGGGAGAAATAGCACCGGTACAGCAGGACAGGACACATCCTCTGATGACTGTGTCGGCTGAGCTGTAACTCTTTAGCGAGTGTTGGGAATGCAGCCACCTCTAGCGCCGGCCACAGTCAGAGAGCTGGTGCGCTCCCATCTCCATCTTGACCCCGTTGCTGCAGATTTGCGCTGCAGTCTTTTGGTGGCTGCCGCACAGAGCTACAAGCGTGATTCTGTCCTGAGGCCATTCCCACCTCGATATCTAAGGGGAGAGATAAAGGATTTTGAAGAGTTGCAGAAAGATGTGAGCTGCTTGCCAAGCATAAGAGACCTGGTCCGACTGGGAGCAGGAGATGGAGATCACCATCTGGCACTAGTACACTGGGTGCTCTCCTCCAAGAGTTTTGCTGTAAAGACCATCCAGAAAGAAGAGTGGGCCAGACTCAGCCAACTGACACAAAATGCAGGAGTCTCCTCTCCTGTGCCAGACTTCCTTTTTGAGTTGGAATACTGTGAACAGATGAATTCAAAGTTTGAGAAGACACGGGCAGGACGGGACATTATCTATGCATTCCATGGCAGCCGACTGGAGAACTTCCATTCCATTATTCACAATGGTCTCCACTGCCATCTGAATAAGACATCACTGTTTGGGGAAGGCACTTACCTGACCAGTGACCTTAGTATGGCTTTCCTCTATAGTCCCCATGGAAATGGATGGTGTGACAGTGTCCTTGGGCCAGTACTAAGCTGTATTGCCTTGTGTGAGATCATTGATCATCCAGATGTGAAGTGTCAGGTAAAGAAGAAAGacTCTGAGAGCATTGACCGCAAGCGTTTGAGGGCAAGGAACAGCGAGGGTGGGGACGTGCCAGAGAAGTACTTTGTGGTCACCAATAATGAGCTGCTGAGAGTGAAGTACCTGCTGGTTTACTCTCAGAAACGTTATAGAACCAGacatgcTCAAGGAACATCATGGCTGGTCAGACACCATTTTGCCATTATGATGGGTCTCTACCTTCTACTCCTCATATTCATTGGTGCCTTCAATTCTACTAGTTTTCAGTCATTTTGGCATCGGATATTCCGGTGATCCAACTTTTCATCACATTTGCCTCATTTCCAAAGTGCCTTTTTCTTTGGTTCACAAAGATCACTTAAGAATTTAGTTTAAGACTTGCAATGAATGTAATGCTCAGGAACCTCTGAACATTTTAACCATCAGTTAGTGTGTACTAGTTGTACTGCAGTTACATGTAATTTAATCGCATTTTAATATGCATTTATTAGCTTTTTATGTCAACACATAATGTAACATTTACATCTGAAAAACAGAGTGGGGAATAGAGGCCTGCTTGTCTAGgctgtgggattttttttatcacttgcATGTAGCTTGTCAtaagaaaacatgttttgtttttttgtataataatgGAATAACTACATTAGCTGTATAACCAAATTATGAGGGACAAATTGCTGTCCTATTGCTACCTTTCTTTACAGGAACGTGCTTGGCCAAGGTCAGTAGCTgcttacataaatgtaaattaattatagGGCACCATTAGTTGACCACAATgatcattttactgtttatagGGCTGAGAGTTTAATTGAATATAGCCTTTCTTATTGTTCCACTAGAACTGTTTGATCCATCTCACAAAATGATTTCTGATACTGCATTCTTATGTCATATACTGTGAGACTGTTGGGTGTTCTTTTCATAATAGTCCCAAAGTTTATGTTTAGAAAAGATTGAAAGACACATTGTCAATATAGTCGATTTAGGAACTGTTtaattctttattgtttaatttcctAAATATGACTAACAGAAGAACAGTAAACTAGGACTAATTGGGTGTGTTTGGTCGGGGGGGATGAtacaaattaatgaaataatacaaaaataatacacattcaGGATGTTATTATAACAAATACAGTATTGTTTCTCATCAATCATTGTTGTCTTCATTTAATGTTAACAATATGCAGTACATGTCCATGGCCATTGACCTATTTTTCTGTGAATAAACCCTAAAATAGTTTACACTTGGGTTAATAAACACATATCTTTCCAGGA

Function

symbol description
parp16 Predicted to enable NAD+ ADP-ribosyltransferase activity; kinase binding activity; and protein serine/threonine kinase activator activity. Predicted to be involved in endoplasmic reticulum unfolded protein response and protein ADP-ribosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum tubular network and nuclear envelope. Is expressed in several structures, including liver; median fin fold; presumptive ectoderm; vasculature; and ventral mesoderm. Orthologous to human PARP16 (poly(ADP-ribose) polymerase family member 16).

NR:

description
PREDICTED: mono [ADP-ribose] polymerase PARP16

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K00774 PARP16; poly [ADP-ribose] polymerase 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920032.2 True 2291 mRNA 0.41 7 17448608 17455078

Neighbor

gene id symbol gene type direction distance location
apba2a LOC108275011,LOC106584731 coding downstream 14171 17424907 ~ 17434437 (-)
duox duox1,LOC108436899,LOC107712499,LOC106561775 coding downstream 28405 17405410 ~ 17420203 (-)
tjp1b LOC108274984,LOC108414298 coding downstream 59667 17323198 ~ 17388941 (-)
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding downstream 157284 17284024 ~ 17291324 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding downstream 193444 17249538 ~ 17255164 (-)
dldh dld,dldh coding upstream 99014 17554092 ~ 17560823 (-)
LOC113529452 NA coding upstream 299306 17754384 ~ 17760039 (-)
LOC113530008 hyal4,LOC108274447,LOC108274446 coding upstream 372402 17827480 ~ 17831769 (-)
LOC117598082 LOC108274445 coding upstream 378035 17833113 ~ 17835443 (-)
LOC117597889 LOC108274445 coding upstream 385034 17840112 ~ 17842564 (-)
G150284 NA non-coding downstream 3783 17440873 ~ 17444825 (-)
G150237 NA non-coding downstream 82821 17365450 ~ 17365787 (-)
G150130 NA non-coding downstream 298127 17125414 ~ 17150481 (-)
G150139 NA non-coding downstream 300000 17147901 ~ 17148608 (-)
LOC117597939 NA non-coding downstream 370523 17075246 ~ 17078085 (-)
G150310 NA non-coding upstream 49208 17504286 ~ 17504936 (-)
G150340 NA non-coding upstream 96012 17551090 ~ 17574660 (-)
G150424 NA non-coding upstream 143710 17598788 ~ 17599194 (-)
G150459 NA non-coding upstream 191655 17646733 ~ 17646945 (-)
G150463 NA non-coding upstream 196595 17651673 ~ 17651880 (-)
LOC113529460 nrg4 other downstream 389702 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1220274 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1456514 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1729033 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2219623 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 749573 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 848064 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 849560 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 898896 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 970241 18425319 ~ 18428973 (-)

Expression


Co-expression Network