man2c1 (man2c1,LOC107752311)


Basic Information

Item Value
gene id man2c1
gene name man2c1,LOC107752311
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16014920 ~ 16024858 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920064.2
AAGGGCCTCTCCAGGCTTCCGTACCTTTCTAACAGCTAATCAGTGACTCATTGATCATGGTTTAGAGTCTCAAGTCTCTCAATGCTGCTATAGTAATAAAATTCTCAGGTGTTTTTGAAGAACCGATTTAACCCGTTTCTAATTATCACGATTAGTAAATCCGGTTTTTTCTTGGATTTGTTAAGTTTCGCACGGGATCTGTTCAGTGCTTTGAAccagtttgtttttaatcatgtttcacCGGCCGGTGCTTAAAAACAGACGGACTCTTCTGGAGCGGGCAGAAAAATTCATTTCTGATGTGTACTTCACCGACTGCAATCTCAGGGGAAGACTTTATGGAGAAACCTGTCCGCTTGagtctctctcagtgtttcagacTGCAAAACGTATCCCATACTCAGAGGCAGTTCAGCAAAACTTTGAGCCTTGCAAAGTTGGTGATGCATTTGGACCCACGTGGTGGACTTGCTGGTTCAAAGTTGTCCTAAAAATTCCAGATGAATGGAAAGGGAAGGAGGTTCATCTGAGATGGGAGAGTGATGGAGAGGGAATGGTATGGCGAGACCAAGAACCAGTCCAGGGTTTGACCAAAGAAGGTGAAAAGACGAGTTACATCCTGACTGAGTGCCTGAAACAGAATGAACCCCACAGCATGACCCTGTATGTGGAATTAGCGTGTAATGGATTGTTTGGGGCTGGACAGGGTTCCATGATAGCTGCCCCTGACCCGAACAGGAAGTACACTCTTCATAAGGCTGAGCTTGTTGTTTTTAATCAAGATGTGCAGGAGCTTCTCACTGACTTTGAGATGCTTGTGGACATTGTTAAGGTGCTAGGTGAAGGACACCAGCGTGGATATCAGGCTTTGTTTACAGCGAATGAGATGGTAAATCTGTGTGACCCAGCCAATCCCAGCTCTTTCTCTTCAGCCCGTAACCTGGCTCAAAAGTTCTTCAACCAGAGGAATGGACAAAGCCAACACATTGTGCATGCTATGGGCCACTGTCACATTGACACAGCCTGGCTGTGGCCATATGAAGAGACCATCAGAAAATGTGCACGCAGCTGGGTCACAGCAGTCCGCTTAATGGAGAAGAACCCACAGTTTATCTTTACTTGCTCCCAGGCACAGCAGTTTCTGTGGGTGAAGAACTGGTATCCAGGCCTGTTCTCCCAGATCCAGCACTTTGTGCAGAAAGGACAGTTTATTCCAGTTGGAGGCACATGGGTGGAGATGgatgGCAATTTGCCTTCTGGAGAGTCTATGGTCAGGCAGTTTTTAGAAGGACAGAACTTCTTTAAAGCAGAACTTGGACAATACTGCAAAGAGTTCTGGTTACCTGATACATTTGGCTACTCTGCACAGCTGCCTCAGATAATGCAAGGCTGTGGTATCTCCCGCTTTCTCACTCAGAAGTTAAGCTGGAATCTTATCAACACGTTTCCACACAGCACTTTCTTTTGGGAGGGCATTGATGGATCCCAAGTGTTAACGCACTTCCCTCCTGGGAACTCCTATGAGATGAAGGGTAAAGTAGAGGATCTAATCAACACCATCAGGAACAACAAAGACAAGGGGCGGGCAAATCACAGTGCAGTGCTGTTTGGTTTTGGCGATGGAGGTGGAGGACCTACCCAGGTCATGCTGGACCGCTTACAGCGTGTACAGGATACAGATAGTCTACCCAGGGTTCAAATGTCCAGTCCAGATCGTCTCTTCGCTGAACTACAGGCTGACTCTGGGCTCCTGTGTACCTGGTCTGGTGAGCTCTTCCTTGAGCTGCACAATGGCACTTATACTACTCAGGCAAAGATAAAGCTGGGGAATCGTCAATGTGAGGCCCTACTGCATGATATTGAGGTGGCCAGCTGCCTGGCACTGTGTAAAAGCTCAGGTTTCTCATACCCATCAAAAGAGCTTCAAAAATTATGGAGGCTTCTCCTGCTCAACCAATTTCATGATGTCATTCCTGGCAGTTGCATTGAGATGGTGGTAGAAGATGCATTACAATATTATGATGaaaTTCAAAAGACTGGCTCCAGACTCCTGCTTTCTGCCTGCGATGCGCTAAGATCTAGTCCCCATCTTGGAGCAGGCTCCGGGACAGCAGTTCTCAATACACTCTCTTGGGAGCGCACTGAAGTCATAGAACTGCCAGAAGAGGGCACTCAGAGAAAGCTAGTCTTGGTGAAAGCCCCCAGTGTGGGAGTAGCTCCAGTCATAGAGTCTGCTGAGCCTGCATCTGTAGTCACTGTAACAGTGCAGCCTGATGGTACTGTCAGAATGGAGAATAGTCTTTTGAAGGCTGTCTTGGACAAAATGGGTCGTTTGGTGTCCTTGCTTCATATGCAGACAAACAGAGAGGCCATTTCCGAGGGCTGTTTTGGAAATCAGTTTGTGGTTTTTGATGACATTCCTTTATACTGGGATGCATGGGATGTGATGGACTACCATCTTCAGACCAGGAAGCCTGTAGTGGATGTGGCACGGCCTGCAAAAGTGCTGAGCTCTGGAGGGCTGCGAGGAAGTGTGACCTTCTCCCTGTGCATCAGCGGGAGGAGCAGCATCATACAGGAAGTCATACTGGATGCCAACTGTCCTTACATCAAGTTCAGCACAGAGGTGGATTGGGCAGAGGCACATAAGTTCCTCAAGGTGGAGTTTCCTGTGCAGGTTCGCAGTTCGAATGCCACCTATGAGATTCAGTTTGGTCACCTGCAGAGacctacacacagaaacacatcctGGGACTGGGCTCGCTTTGAGGTGTGGGGCCATAAATGGGCTGATCTCTCAGAACATGGCTTTGGCGTGGCTCTTCTGAATGACTGCAAATATGGCCACTCTGTTCACCAGAATATCATGACCTTATCATTACTGCGAGCACCGAAAGCACCTGATGCCAATGCAGATATGGGGCATCATCAGTTCACATACGCAATCATGCCACACGAAGGCTCTTTTCAGGATGCATCAGTCATCCAACATGCCTACAACCTCAACTTTCCGCTTCGTCTGATTCCTGACGTCAACATCGTCAATCCTTGGAGGGCGTTCAGCATTAGCTCAGCAGCTGTCATCCTGGAAGTTATCAAACAGGCTGAGGGAAGGAAGAATGTCCTTGTTGTCCGTCTGTATGAGTCTTACGGAAGCAGTGTCGCTGCAGTTCTGTCTACCTCCCTCCCAGTGCGAGAGGCTTGGCATTGTGACCTGCTGGAGCGGCCTGGGTGTCCTGCTGCAGTCACCGACAATGAGATTTCCCTCACTTTTAAACCGTTTCAGATCATCTCACTCCTGTTGCATCTACACTGAGCTAAACCCATCAGCACATAAGCcttgatatttacatatttcatgcaaataactttttttaattttatgattttcttGTAATTTCTTGAAAGTTTATGTAACTTAGTAATAAAGTCATCTTTTTGAGTTATTGATA

Function

symbol description
man2c1 Predicted to enable alpha-mannosidase activity. Predicted to be involved in oligosaccharide catabolic process. Predicted to act upstream of or within mannose metabolic process. Orthologous to human MAN2C1 (mannosidase alpha class 2C member 1).

NR:

description
alpha-mannosidase 2C1

GO:

id name namespace
GO:0006013 mannose metabolic process biological_process
GO:0004559 alpha-mannosidase activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01191 MAN2C1; alpha-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920064.2 True 3452 mRNA 0.47 26 16014920 16024858

Neighbor

gene id symbol gene type direction distance location
sema7a sema7a coding downstream 9557 15997889 ~ 16005363 (-)
ccdc33 ccdc33 coding downstream 78342 15904320 ~ 15936578 (-)
pkp3a LOC108275089 coding downstream 150218 15848138 ~ 15864702 (-)
ano5a ano5,LOC107728425 coding downstream 212293 15772414 ~ 15802627 (-)
LOC113529694 LOC108274566 coding downstream 243435 15769696 ~ 15771485 (-)
ca12 ca12 coding upstream 3297 16028155 ~ 16043852 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding upstream 96799 16121657 ~ 16140904 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 116738 16141596 ~ 16165999 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding upstream 156059 16180917 ~ 16199115 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding upstream 211285 16236143 ~ 16238157 (-)
G149366 NA non-coding downstream 111018 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 112278 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 116759 15897890 ~ 15898161 (-)
G149312 NA non-coding downstream 256419 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 262450 15751159 ~ 15752470 (-)
LOC113529609 NA non-coding upstream 43571 16068429 ~ 16092930 (-)
G149495 NA non-coding upstream 68214 16093072 ~ 16095175 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 156048 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding upstream 205756 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 224303 16249161 ~ 16251085 (-)
islr2 islr2,LOC107662462 other downstream 22826 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 295345 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 785935 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 926860 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1202215 14810004 ~ 14812705 (-)
acsbg1 acsbg1 other upstream 116261 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 1028495 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2179793 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2278284 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2279780 18304638 ~ 18304801 (-)

Expression


Co-expression Network