pkmb (pk,LOC108275437,LOC108436941,LOC107716749,LOC107661438,LOC107696282,LOC107573699)


Basic Information

Item Value
gene id pkmb
gene name pk,LOC108275437,LOC108436941,LOC107716749,LOC107661438,LOC107696282,LOC107573699
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18368046 ~ 18375364 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026920066.2
TCCAGGAAGTAGTACCGGTTAGTGACGGTGTTAAATGAGGAGCGCGCGCTCGCGACCAGCGCACAACTGCTTGTGACGGGCCAGAGTCTCCGAACGTTCCAGCAGACACTGCTCCAATAATGTCTAAGGTTAAAGATATGAGCTCTTCCCTCATTCACTCTCAGCAGCTCCATGCTGCTATGGCAGACACTTTCCTGGAGCACATGTGCCTGCTGGACATTGACTCCGAGCCCACAGTGTCTCGCAACACTGGCATCATTTGCACAATTGGGCCAGCTTCCCGCTCTGTGGAGAAGCTGAAGGAGATGATCAAGGCTGGCATGAACGTTGCACGCTTGAACTTTTCTCATGGAACTCATGAGTACCATGCTGAAACCATCAAGAATGTGCGTGAAGCCACTGAGAGCTTTGTACCTGGAAGCTTTGAGTACAGACCTGTGGCCATTGCACTGGACACCAAAGGTCCTGAAATCAGGACCGGACTCATCAAGGGAAGTGGCACTGAAGAGGTGAAGCTAAACAAGGGTGAGAAAATCAAGCTGACCCTGGACGACAAATACAAGGACAACTGTGACGAGAAAACCCTGTGGCTAGATTACAAGAATATCACTAAGGTTGTTCAGCAGGGCAGCAAGGTCTACGTTGATGATGGCCTCATTTCCCTGAAAGTCCTAGAAATTGGTGGTGACTACTTGATGTGTGAGATTGAGAATGGTGGAATGTTGGGCAGCAAGAAAGGTGTGAACCTGCCTGGTGCTAAAATAGATCTGCCGGCTGTGTCTGAGAAGGACATCCAAGACCTGCAGTTCGGTGTGGAGCAAGGGGTGGACATGGTGTTTGCGTCCTTCATCCGCAAGGCTGCTGATGTTCATGCTGTCAGGAAGGTGTTGGGTGAGAAGGGCAAGAACATCCAGGTCATCAGCAAGCTGGAGAACCATGAGGGGGTGCGCAATTTTGATGAGATTCTGGAGGCCAGCGATGGTATCATGGTTGCCCGTGGAGACATGGGTATCGAGATCCCCACAGAGAAGGTCTTCCTGGCTCAGAAGATGATGATTGGACGCAGCAACAGGATTGGCAAACCTATCATTTGTGCTACACAgATGCTGGAGAGCATGATTAAGAAGCCCCGTCCTACTCGTGCTGAGAGCAGTGATGTAGCCAATGCTGTGCTGGATGGTGCTGACTGCATCATGCTGAGCGGAGAGACAGCCAAGGGCGAGTACCCTGTTGAGTCTGTGTTGACACAGCACCTGATTGCTCGTGAGGCTGAGGCAGCCATGTTCCACAGGCAAGTGTTTGAGGAGTTGCGTCGCATCACACACCTGACCCGTGACCCCTGTGAATCTGTGGCCATAGGAGCTGTGGAAGCTTCCTTTAAGTGCTGTGCCAGTGCCATTATCGTTCTCACCAAATCTGGAAGatCCGCTCATATGCTGTCTAGATACAGGCCTCGCGCCCCCATCATGGCTGTGACCCGGAACGAGCAGACAGCACGTCAGAGCCATCTGTACCGTGGCATCTTCCCCATCCTCTACAACAAGCCTGCCAATGATGTGTGGGCCGAGGATGTGGACCTGCGTGTCAGCTTCGCCCTGGAGATGGGTAAAGCCCGGAAGTTCTACAAATCTGGAGATGTGGTGATTGTTGTCACTGGTTGGCGTCCTGGCTCTGGCTACACCAACACCATGCGTGTTGTTCTGGTGCCTTGAGCACTATGAATAAGAACTGTGCCATTCCCCATAATCCCTGAATCCCATAGTTTCTTTCTACTTAGATTTAATCTACTTGATATGTTGACACTCTAAATGAAGCCCCTGCTATGTATTTCCAGAGGACTCTATGATGCTGTTTACACTGCATTTGCTTACTCCTCAACTGTACCAAAAGTAATCTCAAAGCACTTTGACCAACTGACCAGAGATTTGCACTCATCTGCCCTACAGTGCTTCTCCTTGGAGTTTGTACCACACTTTGTTGGTATGCTTTGTTGTGGCTGTTGTATAGGTTGTTGTGTAGTGCTATAGTGTGTGAGGCAGTTGCCTGTATAAGCTCACCAAATTGTGATACAGCCACACCTCTCTTTCAGCTCATACTTTCATAGCTGTTCTCTTTGCACACAGACCACTGATCCATTCATTAAACTGACGATCACCTGA

Function

symbol description
pk Acts upstream of or within eye pigmentation.

NR:

description
PREDICTED: pyruvate kinase PKM-like

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0016310 phosphorylation biological_process
GO:0030955 potassium ion binding molecular_function
GO:0000287 magnesium ion binding molecular_function
GO:0004743 pyruvate kinase activity molecular_function

KEGG:

id description
K00873 PK, pyk; pyruvate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026920066.2 True 2159 mRNA 0.50 11 18368046 18375364

Neighbor

gene id symbol gene type direction distance location
LOC113529962 LOC108275334 coding upstream 50321 18306241 ~ 18317725 (+)
amn1 amn1 coding upstream 65121 18297594 ~ 18302925 (+)
si:ch211-106e7.2 NA coding upstream 71344 18276911 ~ 18296702 (+)
slc41a2a NA coding upstream 113276 18245570 ~ 18254770 (+)
cnot2 cnot2,LOC108275083,LOC108436929,LOC107678985,LOC107696293,LOC107752336 coding upstream 140385 18214123 ~ 18227661 (+)
pim3 pim3,LOC108275436,LOC108436897,LOC107716739,LOC107598820,LOC107696273,LOC107573827 coding downstream 112120 18487484 ~ 18490931 (+)
brd1b LOC108436948,LOC108275266,LOC107661448 coding downstream 116381 18491745 ~ 18503991 (+)
prr5l prr5l,LOC107573861 coding downstream 193249 18568613 ~ 18577366 (+)
api5 api5,LOC107696269,LOC107753602 coding downstream 203747 18579111 ~ 18586692 (+)
hsd17b12a hsd17b12,LOC107696265,LOC107661451,LOC107573907,LOC107716735,LOC107753600 coding downstream 246824 18622188 ~ 18634768 (+)
G150900 NA non-coding upstream 938 18366882 ~ 18367108 (+)
G150873 LOC108275329,LOC102219286,LOC107096723,LOC103150244,LOC103466419,LOC103046663 non-coding upstream 22317 18342243 ~ 18345729 (+)
LOC117598020 NA non-coding upstream 228901 18130846 ~ 18139145 (+)
G150609 NA non-coding upstream 452804 17914625 ~ 17915242 (+)
G150592 NA non-coding upstream 455463 17911637 ~ 17912583 (+)
G150933 NA non-coding downstream 48194 18423558 ~ 18424220 (+)
G150932 LOC108436944 non-coding downstream 49953 18425317 ~ 18444052 (+)
G150952 NA non-coding downstream 154775 18530139 ~ 18530708 (+)
G150954 NA non-coding downstream 161897 18537261 ~ 18537855 (+)
G150958 NA non-coding downstream 176529 18551893 ~ 18552137 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 184013 18182554 ~ 18184033 (+)
G150589 LOC108274445 other upstream 525511 17834237 ~ 17842535 (+)
LOC113529564 ano9,LOC108442698 other upstream 2545455 15807990 ~ 15822591 (+)
svip svip other upstream 2642955 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 2715362 15563306 ~ 15652684 (+)
rfwd3 rfwd3,LOC107754982 other downstream 299646 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 346231 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 372463 18747827 ~ 18796259 (+)
faap24 faap24 other downstream 745787 19121151 ~ 19125201 (+)
G151401 NA other downstream 885260 19260624 ~ 19263893 (+)

Expression


Co-expression Network