LOC113547120 (LOC108275395,LOC108439812,LOC105903016)


Basic Information

Item Value
gene id LOC113547120
gene name LOC108275395,LOC108439812,LOC105903016
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5838626 ~ 5850058 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947344.2
aaaaatcattttgcttCAGGAGAGTAAACAGAACTGATCCTCAAAGCATCAGACATTCAGCAAGAAGGCATGACCCCGGGTTTTACTGAGACCATGAGCGCCATGCAACAGCtCACTCCAGCCTTAGAAGAAAATTAAATAGAGAAGGGGATCATGTCCTGGCACAAGGTCGGTTCGTTCCTGCGTGGTCTGTCCCGCAGGAAGCCTCTAGAGCCAGAAGGCGAAGTGTCCACATTCCGGAGGTGTCTCGGGACAGTAGACCTGGTGGCTCTTGGTGTGGGCAGCACGCTGGGCGCCGGCGTCTACGTGCTCTCGGGTGAGGTGGCCAGATCTCTGTCTGGCCCCAGCATCATCATCTCCTTCCTCATCGCCGCTCTGGCCTCCATCTTCGCTGGACTCTGCTATGCTGAATTCGGGTCCCGCGTTCCCAAGACAGGATCGGCCTACCTCTACAGCTACGTGACTGTGGGCGAGGTGTGGGCTTTCATCACGGGGTGGAACCTGCTGCTCTCCTACGTCATAGGTGCCTCCAGCGTGGCCCGAGCCTGGAGTGGCACTTTTGATGATATGATTGGAAATGTGATGTCGAATTACTTCAGCAAACACGCAGCCATGGGTCTGCCGGGCCTGGCTCCTTACCCAGACTTCTTTGCAGCTGGCCTCATTATGCTTCTCGCTGGTCTTCTTGCGTTTGGTGTGAAAGAATCGACGACGGTCAACAAGATCTTCACGAGCATTAACATACTGGTGTTGGTGTTCGTCATCATCAGTGGCTTCATCAAggggaaactggagaactgGTACATCAGCGAGGAAACATTACTGAACGTCACAGCAGAACTTGAAAACCTGACGTCTACACTGAACGTGACTTCTGAGTTTGGGCACGGCGGGTTTTTCCCCTACGGCTTTGAGGGCACGCTGGCCGGAGCTGCCACTTGTTTCTATGCCTTCGTAGGGTTTGACTGCATTGCGACTACGGGTGAGGAGGTGAAGAACCCTCAGAAGTCCATCCCGCTGGGGATCGTCTTTGCACTGCTCATCTGTTTCCTGGCTTATTTCGGCGTTTCAGCCGCTCTCACACTGATGATGCCTTACTACCTGCTGAACATCCACAGCCCTCTGCCAGTCGCCTTCTCCTACGTGGGATGGGCCACCGCCAAGTACGTCGTCGCTGTGGGATCCCTGTGTGCACTCTCTACTAGCCTGCTGGGAGCCATGTTCCCGATGCCTCGAGTGATCTTCGCCATGGCTAGAGACGGCCTCCTCTTTAAAGTGCTGTGTAAAGTCAGCTCGAGGAAAAGTCCTGCCATGGCCACCCTCACCTCCGGCTTTGTGGCAGCTATAATGGCGCTGTTATTCGATCTGAAGGCGCTGGTTGATATGATGTCGATCGGGACTCTGTTTGCCTACACTCTCGTAGCCATTTGCATTCTCATACTGAGGTACCGTGAGAGTGAATCTGCAGAGAATGAAATAAGCTTCACTCCAAGGTCAAAGTTCGGATTTTTAAAACCTCCATCGTACCCAACCAAGGAAACATCAAACACCGTCAACGTCTGCACTATGTTTATCATCGTCCTGGTGGTGGTCCTGACCGTCCTGCTGTCCAAAGCCATCacatcactgctgctgctggaggtctggagtctggtgtgtgtgtctgtgatccTCTTCATAATGCTGCTCTGCACACTGCTGATCTGGAGGCAGCCTCAGAATCCCACTAAAGCAGCTTTCatgGTGCCTTTCCTGCCTTTACTTCCTGTGGTGAGTTCATTCATCAACATTTACCTGATGGTTCAGCTCGGAGGCGCTACCTGGATCCGCTACGCCGTCTGGATGGCTGTGGGACTCCTGATCTACTTTGGGTACGGTGTGAGGAACAGCATCCAGAAACAGAGGCTGCTGGGAAACCTGAGCAACATGGAAATTGCAAAGGAAATCCCAGAGAAAGATGTGACCAAAGGATAAAACTTATACACCAGCGTCTGATAATCAAATAATCCGTTTAGTGATCACCTAATATTTTAAcgataataacaataataatttttttttaacacacgtGAATTTGTTAACATTGTGATATAATGGTGAAacagttacacatttttatatatgcttttataaaaatgtttcatgttttgaaCAGAGCCGTTGACACACAGTGGTCTGATAACTGATGCT

Function

NR:

description
PREDICTED: cationic amino acid transporter 2-like

GO: NA

KEGG:

id description
K13864 SLC7A2, ATRC2; solute carrier family 7 (cationic amino acid transporter), member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947344.2 True 2190 mRNA 0.51 14 5838626 5850058

Neighbor

gene id symbol gene type direction distance location
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 255877 5565321 ~ 5582749 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 418466 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 932763 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 1148013 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 1207200 4606321 ~ 4631426 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 4172 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 15399 5865457 ~ 5903463 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 117684 5967742 ~ 5975213 (+)
LOC113547108 LOC108274551 coding downstream 148409 5998467 ~ 6037800 (+)
LOC113547149 LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219 coding downstream 175738 6025796 ~ 6034619 (+)
G143644 NA non-coding upstream 111039 5724880 ~ 5727587 (+)
G143622 synpo non-coding upstream 185740 5649094 ~ 5652886 (+)
LOC117598079 NA non-coding upstream 225318 5610562 ~ 5613308 (+)
G143601 NA non-coding upstream 233966 5600363 ~ 5604660 (+)
G143577 NA non-coding upstream 346788 5491294 ~ 5491838 (+)
G143757 NA non-coding downstream 60925 5910983 ~ 5912741 (+)
G143766 NA non-coding downstream 72753 5922811 ~ 5923752 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding downstream 82523 5932581 ~ 5936329 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding downstream 128044 5978102 ~ 5984378 (+)
G143987 NA non-coding downstream 506259 6356317 ~ 6357920 (+)
gpx3 gpx3 other upstream 90682 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1329378 4484833 ~ 4509248 (+)
G142576 NA other upstream 2376455 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2442559 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 3029989 2559811 ~ 2808637 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 737153 6587211 ~ 6593605 (+)
G144353 NA other downstream 929931 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 933458 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 946914 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 1101014 6951072 ~ 6951422 (+)

Expression


Co-expression Network