n4bp3 (LOC108274652)


Basic Information

Item Value
gene id n4bp3
gene name LOC108274652
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5865457 ~ 5903463 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947345.2
TGGAGCGCTTTCTAAACAAAGGGGCCAAGAAAGTTAGATAAGAGTAATCTGAGACGCTCGTCGGCACAGGGAAGTttctcagggaatttttccaAGCCGAGAGCGACAGTAGCTCTGTGAGATTAATAAGAGAGCACAACGTTTAGAGGCTGGTGTTCGGAAACAGCGCTGAAGCAGGGGCAGGTGTAAGGAGACAGCAGAACgatagagcgagagagagagagagaagcagggGGTCGGAGTTGGACAGACGACACAATCTGCTTCAGACTTCCCATTGGAGCCACCTAATCCAATAACCAATGGCAACAGTCCAGGCCCTGCCTTTGACCCAAGATCCCAGCAAGAGCATCAGTGCCATTTATCCAGCATCCTCTCTGGTATCTGCTGACTGCGTTATGGGTAGTGTGGGCAGTCTGATCGAGAAGCATGACCCGGCGCCCACCAAAGGCAACAAAGCTGTTCCTCAGGTCCCACAGCGGCAGAGCAACGGGCAGAACAGAAAGGGCTTCAGCCAGCGAGAGCTGCTAAACTACCTGAACATCACCAAGAAGGAGCCGAAAGCAGGCAAACACATCGTCTGCAGCAACTCATCCATCAAGAGAGAGCACTCCAGAGAAGAGGAGAACCTCTACGCCAAGGTTTATCATAAAGACGGCAAAGAGGTGGACCTGGGGAAGAACTCTCTCCCAATAGGCGGCAAGTTTGATAAGccCCGTTTCAGATCGTCTGCCTTTAAGCCAGTGACGCCAAAGAACTTTAGCTCCATGCAGAACCTTTATCCATCCAAATCCGAGGAACTGATGAATGGCAAGCATTCATTCTACTCCAAGACATCCAAATCTCTATCCACGTCCTCCTCGTCCTCTTCTCCTTCACGGGTGGGTAACAGCGCCAACAAGGGTGTCCTGGCAGTTCCCCATGAAGAGGAGACAGCCTCAGACTCAGGCCATAACTCTATGAGCAGCCTGCCACCGTACCGCCCTCCGTTCCGCCCCCACCTGGGACAGATCAGCGCCTCCATGGGTCATATTGAGCACATTGGCTCGTTTGAGCGGACTTCAGCGGGCACAGTGGGCATCGGTGCTCTTAGTACGGCCCCCGAGTCCTATGAGCTCTCACAATCTTTGGAGGATGTGGTGAAGGACCTTGAGGAGCGACTCCAGGAGAAAGAGCACGAACTGTGGCAGATGAGGAGGAACCTGGATGAGAGCGAGGACGCCATCGCACAGgtgtttgagGGGAAGCAGCGGCTGTGGGAGAAAGAGGTGTCTGAGCTGAAGCAGCTCTACACCACTAAGCTGCGTCAGGTATCCCAGCAGTCTCAGCGCTCCCAGCGTGCTCTGCAGCTGCAGCTCTACAAGGCTCAGCACGAGCGCAGCCGAATACAAGACGAACTCAACACGTTGCGTCGCAAATACCAGAGCCTGCAGAAACAGGGCGGAGCCGGGCAGAGCCATGAGCTCCAACCACAGCTTGAGGAGTCCCAGTGGGAGgtgtgtcaGAAGGCAGGTGAGATCTCCCTGCTGAAGCAGCAGCTCAAAGACTCCCAGGCTGAGGTGGCTCAGAAGCTCAGTGAGATCTTCCTGCTGAAGACGCAGCTGCGCGAGACGCGTCATGAGCTGTCCACCAAAGATGGCCAGCTGGACATGCTGCAACTGGCACTGCAGGCCACACGCCGCAAGATTTCCCTGGGGAAGTCGGTACAGAACCTGTCCTCCCACCAGACTCCGGGTGAGGACAGCGGGACGAGCAGCGCCACAGAAGAGCGTCTCCGTGCCGAGCTGTTGCTGGAGCGGCGTCAGAGCGAAGCTCAGGCGTCAGCCTTCGACGCCGAGCGCAGCACGTGGCagctggagaaggagaaggTGCTTCGCTATCAGAGAGAGCTGCAAGCCAGCTACCTCGAGATGTTTCACAAAAACGAGAGCCTGGAGAGAGAACTGCAGCAGCTCCGAGGAGGTGGGGCTGGAGCTGTGGTGGGCGGGGCTGGAGCTGTGGTGGGCGGGGCTCTAGCAGAGCCCTCGGGTCTTCCCTGGATTGAAAGGATTGAGTCTTCTGAAATCtgaatatatgtatacatgCAGTATGTGTCtataatatatgtgtatatgtgaatatcagaataaatgtacaaaactgAAAGACTCTAAATGAGCAAAACGATAAAAGCATTGCTTTTGTTGAGTTTCTTAAATTGTTTATATCTATATGAATGTAAATTAGTTTCGATTTGTGAACCAAAATAAGAACAGTTATTCCACAGTGTTGCGTGTTCCAGATggatttgctttttaaaaaaaaagggattttGTTGTAATGTCTTCTTGAAGACTTATTCCATttacacaatgttttattagatatatttttacCGTATTCTCTAAACTATAAAGTACTATTCGAGCTGGGTTCATTTTTACCAGAAGAGGTTCAATCATGTACACTTTGTGATTTAAAAGCGATTCAGCTGTtggaataaaatgtgtaattttccCCAAATTATCTCCAATATCCAGGAATAACATGTCATGTGCCAGATGTACACATCTGCTGccacacaataaaaacacatcatgaGTAAGCATGA
>XM_026947346.2
TTTAAATGtcggagagggaaagagagcaGAGTGAGTTTTACTGTCGAGTCGCTCGGATGTTTGTGCTGTTCTGAGTTTAGCGCCAAACTGGAGGGAATATTTCActtttgagttaaaaaaaaataagcaataagGAGTTAAAATATCACGCTTAAGACTATAGGTTCATCATCAGCTACTGGACTCGATAATGACTTCCCATTGGAGCCACCTAATCCAATAACCAATGGCAACAGTCCAGGCCCTGCCTTTGACCCAAGATCCCAGCAAGAGCATCAGTGCCATTTATCCAGCATCCTCTCTGGTATCTGCTGACTGCGTTATGGGTAGTGTGGGCAGTCTGATCGAGAAGCATGACCCGGCGCCCACCAAAGGCAACAAAGCTGTTCCTCAGGTCCCACAGCGGCAGAGCAACGGGCAGAACAGAAAGGGCTTCAGCCAGCGAGAGCTGCTAAACTACCTGAACATCACCAAGAAGGAGCCGAAAGCAGGCAAACACATCGTCTGCAGCAACTCATCCATCAAGAGAGAGCACTCCAGAGAAGAGGAGAACCTCTACGCCAAGGTTTATCATAAAGACGGCAAAGAGGTGGACCTGGGGAAGAACTCTCTCCCAATAGGCGGCAAGTTTGATAAGccCCGTTTCAGATCGTCTGCCTTTAAGCCAGTGACGCCAAAGAACTTTAGCTCCATGCAGAACCTTTATCCATCCAAATCCGAGGAACTGATGAATGGCAAGCATTCATTCTACTCCAAGACATCCAAATCTCTATCCACGTCCTCCTCGTCCTCTTCTCCTTCACGGGTGGGTAACAGCGCCAACAAGGGTGTCCTGGCAGTTCCCCATGAAGAGGAGACAGCCTCAGACTCAGGCCATAACTCTATGAGCAGCCTGCCACCGTACCGCCCTCCGTTCCGCCCCCACCTGGGACAGATCAGCGCCTCCATGGGTCATATTGAGCACATTGGCTCGTTTGAGCGGACTTCAGCGGGCACAGTGGGCATCGGTGCTCTTAGTACGGCCCCCGAGTCCTATGAGCTCTCACAATCTTTGGAGGATGTGGTGAAGGACCTTGAGGAGCGACTCCAGGAGAAAGAGCACGAACTGTGGCAGATGAGGAGGAACCTGGATGAGAGCGAGGACGCCATCGCACAGgtgtttgagGGGAAGCAGCGGCTGTGGGAGAAAGAGGTGTCTGAGCTGAAGCAGCTCTACACCACTAAGCTGCGTCAGGTATCCCAGCAGTCTCAGCGCTCCCAGCGTGCTCTGCAGCTGCAGCTCTACAAGGCTCAGCACGAGCGCAGCCGAATACAAGACGAACTCAACACGTTGCGTCGCAAATACCAGAGCCTGCAGAAACAGGGCGGAGCCGGGCAGAGCCATGAGCTCCAACCACAGCTTGAGGAGTCCCAGTGGGAGgtgtgtcaGAAGGCAGGTGAGATCTCCCTGCTGAAGCAGCAGCTCAAAGACTCCCAGGCTGAGGTGGCTCAGAAGCTCAGTGAGATCTTCCTGCTGAAGACGCAGCTGCGCGAGACGCGTCATGAGCTGTCCACCAAAGATGGCCAGCTGGACATGCTGCAACTGGCACTGCAGGCCACACGCCGCAAGATTTCCCTGGGGAAGTCGGTACAGAACCTGTCCTCCCACCAGACTCCGGGTGAGGACAGCGGGACGAGCAGCGCCACAGAAGAGCGTCTCCGTGCCGAGCTGTTGCTGGAGCGGCGTCAGAGCGAAGCTCAGGCGTCAGCCTTCGACGCCGAGCGCAGCACGTGGCagctggagaaggagaaggTGCTTCGCTATCAGAGAGAGCTGCAAGCCAGCTACCTCGAGATGTTTCACAAAAACGAGAGCCTGGAGAGAGAACTGCAGCAGCTCCGAGGAGGTGGGGCTGGAGCTGTGGTGGGCGGGGCTGGAGCTGTGGTGGGCGGGGCTCTAGCAGAGCCCTCGGGTCTTCCCTGGATTGAAAGGATTGAGTCTTCTGAAATCtgaatatatgtatacatgCAGTATGTGTCtataatatatgtgtatatgtgaatatcagaataaatgtacaaaactgAAAGACTCTAAATGAGCAAAACGATAAAAGCATTGCTTTTGTTGAGTTTCTTAAATTGTTTATATCTATATGAATGTAAATTAGTTTCGATTTGTGAACCAAAATAAGAACAGTTATTCCACAGTGTTGCGTGTTCCAGATggatttgctttttaaaaaaaaagggattttGTTGTAATGTCTTCTTGAAGACTTATTCCATttacacaatgttttattagatatatttttacCGTATTCTCTAAACTATAAAGTACTATTCGAGCTGGGTTCATTTTTACCAGAAGAGGTTCAATCATGTACACTTTGTGATTTAAAAGCGATTCAGCTGTtggaataaaatgtgtaattttccCCAAATTATCTCCAATATCCAGGAATAACATGTCATGTGCCAGATGTACACATCTGCTGccacacaataaaaacacatcatgaGTAAGCATGA

Function

NR:

description
PREDICTED: NEDD4-binding protein 3 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947345.2 True 2590 mRNA 0.51 6 5881846 5903463
XM_026947346.2 False 2514 mRNA 0.50 6 5865457 5903463

Neighbor

gene id symbol gene type direction distance location
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding upstream 4250 5854230 ~ 5861207 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding upstream 15399 5838626 ~ 5850058 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 282708 5565321 ~ 5582749 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 445297 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 959594 4902900 ~ 4905863 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 64279 5967742 ~ 5975213 (+)
LOC113547108 LOC108274551 coding downstream 95004 5998467 ~ 6037800 (+)
LOC113547149 LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219 coding downstream 122333 6025796 ~ 6034619 (+)
LOC113547147 LOC108274655 coding downstream 136265 6039728 ~ 6075245 (+)
lingo4a LOC108274662 coding downstream 174454 6077917 ~ 6086079 (+)
G143644 NA non-coding upstream 137870 5724880 ~ 5727587 (+)
G143622 synpo non-coding upstream 212571 5649094 ~ 5652886 (+)
LOC117598079 NA non-coding upstream 252149 5610562 ~ 5613308 (+)
G143601 NA non-coding upstream 260797 5600363 ~ 5604660 (+)
G143577 NA non-coding upstream 373619 5491294 ~ 5491838 (+)
G143757 NA non-coding downstream 7520 5910983 ~ 5912741 (+)
G143766 NA non-coding downstream 19348 5922811 ~ 5923752 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding downstream 29118 5932581 ~ 5936329 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding downstream 74639 5978102 ~ 5984378 (+)
G143987 NA non-coding downstream 452854 6356317 ~ 6357920 (+)
gpx3 gpx3 other upstream 117513 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1356209 4484833 ~ 4509248 (+)
G142576 NA other upstream 2403286 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2469390 3384180 ~ 3396067 (+)
LOC117598057 NA other upstream 3172615 2687795 ~ 2692842 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 683748 6587211 ~ 6593605 (+)
G144353 NA other downstream 876526 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 880053 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 893509 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 1047609 6951072 ~ 6951422 (+)

Expression


Co-expression Network