ppp2caa (ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939)


Basic Information

Item Value
gene id ppp2caa
gene name ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5967742 ~ 5975213 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947347.2
AACGCTGCTCAGCTTCCTCTTCGCTTCCTGCGCGGGTGCAGGCGCTTCAGACTCGCAATCATCGGAgtctatttctgtctttctgtttcttttcagtGCTCATGTCAAAATCCTAAATTATTCTCGGATACATTAGGATAATTCTGCATGTATCTGTAGAACTGAGCTGCTTCGTTGTAATttttaaacgtttttttttaaaacggaAAGACCCGGATGACGCGAGACCCGGTTTAGCTCAATTGGCCACAAAAAAACATCCGCTTTCTCCCCCTAAAATCCTACATTAAcgatttattttttgattttatttgctcTCGGCTGGTGAGTATGGATGAGAAGGTGTTTACAAAAGAACTGGATCAATGGATCGAGCAGCTGAACGAGTGCAAACAGCTGTCGGAGAACCAGGTTAAATTTTTATGCGAGAAAGCTAAAGAGATTTTATCGAAGGAGTCCAATGTTCAGGAGGTACGTTGTCCGGTCACGGTGTGTGGAGATGTCCACGGGCAATTCCACGACCTCATGGAGCTTTTTAAGATTGGCGGGAAATCACCAGACACCAACTATCTCTTCATGGGCGACTATGTGGACCGAGGCTATTACTCTGTAGAGACTGTCACACTTCTAGTGTGTTTAAAGGTTCGATATAGAGAGCGAATCACCATCCTCAGAGGGAACCACGAAAGCAGACAGATCACACAGGTTTACGGCTTCTACGACGAGTGTCTGAGAAAATACGGCAATGCAAACGTTTGGAAATATTTCACCGACCTTTTTGACTACCTTCCCCTCACTGCCCTGGTGGACACACAGATTTTCTGTCTCCATGGAGGACTGTCTCCGTCCATCGATACGCTGGATCACATTCGAACTCTGGACCGCATCCAGGAAGTCCCACATGAGGGTCCCATGTGCGACCTGTTGTGGTCAGACCCCGATGACCGCGGTGGCTGGGGGATTTCACCCAGAGGAGCCGGCTACACGTTCGGCCAGGACATCTCAGAAACCTTCAATCACGCCAACTCCCTGACCCTGGTGTCCAGAGCTCACCAGTTAGTCATGGAGGGATACAACTGGTGTCACGAGCGGAACGTCGTCACGATCTTCAGTGCTCCGAATTACTGTTACCGCTGCGGCAATCAGGCGGCCATCATGGAGCTCGACGACACGCTCAAGTATTCATTTTTGCAGTTCGACCCGGCGCCTAGAAGAGGAGAACCGCACGTCACCCGCCGGACCCCCGACTACTTCCTGTAACGTCTCTGTGCCTGATGAAGTGTTCCTCAGCATTATCCTGATCGCAGACTGAACTGTCATCACaaaatcagctcctctcattTCTCCAAATATTATTGCATCTCTGAATACCTGAATTTGTCCATGGACCAAAATGTGTGCCATCAGCATAATGtaggggaaaagaaaagagaaacacacacacacacacacatacacaactttTAGCCATTTTACATCTACAGTGATTCAATAAAGCTTTGGTTTCCTTGATATGAGCGAACTTCATGCAGATTAAATATCCTACCAGTGTTCTTTTGAAATGTGACTTATTCTTTAGATCATGATGTAGGAGCTTTTGGCTGGACATTgtggtgaataaaaaaaaaaaaaaaaagccatgtgTAGTATCATGCAGATTCAGCCCAACCTCTCATCCGATTCATCTTAGACTTTCAGATGAaagttaatattttgtttaattatatgaagttgaaaatgcactttttttgtgGTACAATCTTTCAGTGTTATCGAATTGTAGATTATTTACAGGCAGATTTGTTTTGTAACTGCATTGTTCCCACCACCACCTTTGTAAAACCGAGCACTTTTTCGTTAATGGAAACTGCGAGCTGTATTTCTTTTCACTATAGCAGTAtgaaaatgtacacaatgtttTTAACGCCTCAGATCTGAGATAAAGCTGTTTTTCTGCC

Function

symbol description
ppp2ca Enables protein heterodimerization activity and protein serine/threonine phosphatase activity. Involved in negative regulation of epithelial to mesenchymal transition; peptidyl-threonine dephosphorylation; and positive regulation of protein serine/threonine kinase activity. Located in membrane raft. Part of protein phosphatase type 2A complex. Biomarker of Parkinson's disease; congestive heart failure; and prostate cancer.

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K04382 PPP2C; serine/threonine-protein phosphatase 2A catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947347.2 True 1958 mRNA 0.44 7 5967742 5975213

Neighbor

gene id symbol gene type direction distance location
n4bp3 LOC108274652 coding upstream 64279 5865457 ~ 5903463 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding upstream 106535 5854230 ~ 5861207 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding upstream 117684 5838626 ~ 5850058 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 384993 5565321 ~ 5582749 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 547582 5414917 ~ 5420160 (+)
LOC113547108 LOC108274551 coding downstream 23254 5998467 ~ 6037800 (+)
LOC113547149 LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219 coding downstream 50583 6025796 ~ 6034619 (+)
LOC113547147 LOC108274655 coding downstream 64515 6039728 ~ 6075245 (+)
lingo4a LOC108274662 coding downstream 102704 6077917 ~ 6086079 (+)
scn1bb LOC108274487,LOC107669127 coding downstream 133650 6108863 ~ 6117537 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding upstream 31413 5932581 ~ 5936329 (+)
G143766 NA non-coding upstream 43990 5922811 ~ 5923752 (+)
G143757 NA non-coding upstream 55001 5910983 ~ 5912741 (+)
G143644 NA non-coding upstream 240155 5724880 ~ 5727587 (+)
G143622 synpo non-coding upstream 314856 5649094 ~ 5652886 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding downstream 2889 5978102 ~ 5984378 (+)
G143987 NA non-coding downstream 381104 6356317 ~ 6357920 (+)
LOC113547099 NA non-coding downstream 446923 6422136 ~ 6428434 (+)
G144221 NA non-coding downstream 569159 6544372 ~ 6544916 (+)
G144256 NA non-coding downstream 653138 6628351 ~ 6684107 (+)
gpx3 gpx3 other upstream 219798 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1458494 4484833 ~ 4509248 (+)
G142576 NA other upstream 2505571 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2571675 3384180 ~ 3396067 (+)
LOC117598057 NA other upstream 3274900 2687795 ~ 2692842 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 611998 6587211 ~ 6593605 (+)
G144353 NA other downstream 804776 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 808303 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 821759 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 975859 6951072 ~ 6951422 (+)

Expression


Co-expression Network