thrap3b (LOC108274713,LOC107734038,LOC107551756)


Basic Information

Item Value
gene id thrap3b
gene name LOC108274713,LOC107734038,LOC107551756
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4606321 ~ 4631426 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947358.2
GGAATTGCATAAACCATTAACGTGCACCAGGAACGCAATATTACGACTTTGTTGTGTAAGAGATCAGACTTCTATGGAAAGTTTTGAAGAAGACGTGATTCCCAAAATGTCCAAGGCACCGAATTCTCCTTCTCACTCTCGGTCCAGATCGAGGTCTCGATCCCGTTCGAGGTCGTATTCGCGATCTCGCTCCAGCAGCCGCTCGCGCTCGAGGTCCAGGAAGCATCGCTACAGCTCTAGATCTCGCTCCCGTTCCCATAGTCGTGACAGAAACTACCCTTCGAGAGATTTTCAGAGCAATCGGGGGTACACTCGTGGTTTCCGTGGCTACCGGAGACCCTTCTATCACAACCGTGGCCGGGGTCGTGGTTATTATCCACGCGGCTACCACagaggaggtggtggtggtggtggttctTACGGTTACCGCTCCAACAACTGGCACGGAGGCCACCGTGACCAGCAGCAATCCCATGAGCACCACAGCCCCAAAAGGGGACGCTCTCGCTCCCGCACACCCCGCAAGCGCTCTAGGAGCCGCAGCCGCTCCCATTATTCCGGCAAATCCTCTTCGATCCGTCACTCTAGCTCATCTTCGCGATCCCCGTCTCCGCGACGCCGCAGCTCTGGAAAAGCTCCGTCTAAGGATTCAAAGAGTAAGACCTCACCAAACGAAGGAAAAGGCAATAGCAAAGAAGCAGAGCCCAAACCTTCTGTACCCATTCCTGAGGAGCCACCGAGCAAATGGGAGAGCATGAGTGACTACACCACCAGTCCTAAAGCCTCTAATCCAGAGCCAACAGCTCCGGTAGGGACCCAACCTGAGGTTAAAGTGTCCCTTTCTGGAGCTACAGGTAATGGTGCCTCTGTTTGGAGAAGCATTAGTGTTCCTGAAACCAAGAGTCCTCCAAAGCCAACAGCGTCAACTGGTTTTGGCTTCTTCTCAAAGGAAGACATGAAGGCAGGAGAGAAAGCGGCCATTACCACAGCATTCAAAAAGTTTCTGGCAGAGAAGAAAAAACCCTCATCTGACTGGGATGACAATCAGGACGAAGAGCCGAATACCAGCGATGCTGAAAAGGAGAAGAGTAACCGAAAACAAAAAGGAATTTTCGAACTGGATCCGGTTTATGTTGAGTCAAAGGCCGAGAAAGGACTTCCGTTTCTGggcgaggaggaagaggagtacTCGaagagcctgagagagagaaaaaccgAGGAGGAACCCAAGTACAAGGCCAAGCCCACTCTGTCTGCGAGGGAGCTGTTTGAGGAGCGTTTTGGGAAGTGGGATGATGACTACGTGTCCAACAAAGATTCGTCGCAACGGGAGGAAGAAATGGAGGAGGAAGAACACGTGATGGAAGAGCTTTACCGAAGCCGAAAGCAGGCAGCACGCAAAGAAGAGAAGGCTGccaagaagaaggagaagaagaagaaccgTGTGAGTCCAGCATCTCCTTCACCGCCCAGAAGCACAGAGCGTAGCAAGCCCCTGTTCCCTTCAGCCAGGGAGTCGTCACCTCCCGCCAGATCCGCTAAGAAGAAAGAGCCTGAATTTAATTTTAGCCTGAAAGCATTTAACGATGACGCAGAGAGCTCATCTGGTGCTTTAGCCAAAGAAAGACGTTTGTCTCAGGATCTAATATACCCTGTTAAGAAAGAGCATGAGGAGTTTCGCTCCATTTTCCAGCACATTCAGGCTGCTCAGCTTCGCCGCAGCCCGTCAGAGCTGTTTGCTCAACACATAGTCACCATCGTCCATCACATCAAAGCTCAGCACTTTCGCTCGTCTGGGATGTCTCTGAATGAGCGATTCGGCATGTACCAAAGAAAAGCCGCACAGATGGAAATGATGAGGCAAAGAAAGAGTCCTGAGATCCACAGGAGAATTGATGTGTCTCCCAGTGCTTTTAAGAAACACGCTCGTCTGTTTGAGGATATGGAAGAGAGCGACTACAAGGATTATGGTAAAAAATATGAAGGAGAGTCAATGGACCTGCGTTTGGATATTGAGCGACGTAAAAAATACCCCAAACGCGAGGGGGGCAAAGGCTCAGCCGGGTCACGCACCCCCAGCCGAGAACTCTCTCCTGACAAATCCTCCAAACACAAGAAGTCAAAgaaaagcaaGAAGAAGCGTGAGCGTTCTCcttcctcctcgtcctcctcttcctctccctcaccCCATGCGTACCGATCCAGAGAGTACCACGGCGAGGAGATGGAGCATATGGAGAAAGGGGGCTTCGATAAGTCCCGCCTGGGGCCGCGAGAGTACCCCCGGGACTATGAGGGGGGCCACATGGAGAGAGGAGGCTacgagagaggaagaggagggtaCGAGCGCGGAGGATTCGACCGAACGGGATACGATAGAGGACGCGGGGGATACGACAGGGGATTTCCTAGAATGAGAGGTAGGGGATGGAACAGGGGAAATTACcccaacaacaataacaatggAAACCCCGCTAACATGGGCGGCCCAGTGCGCCCGCAGGAGGAGGAGTGGGACCCTGAATACACCCCTAAAAGCAGGAAGTACTACCAGCACGATGACCGTGACCGTGAGGGAGAGATGAAGTGGGCGGACGGGCGCGGTCGTGGGCGGGGCATGTACCCGCGCAGCAGAGGCTCCTTCACCGTGCGCAGAGGTGCTGGCGCCGGCGGTAGCAGCGGCAGCCCCAAGTGGACCCACGACATGTTCCAGGGAGCCACGGAGGAGGGAGAGCTGCCTGACGACGGACCTGAGCACGGCCTCAAAGACGACGAAAAAGCAGCTGAGGGCGCCGCCTCTAAACCCTAGACCACACCCACTcatctttctgtgtgttttttttttttttgttttgtgtttttaaatattagttaaTTCACTACTGCAGTCCCCAAACGCAGGTGTGTTGTTCAGATGGAGTGTGCAGCGCTGTTCTGCCGAGCCACTCTGTTTATTCAGTCTCGCAATTAGAACAAAATTCCTTCTGTTTACTTTTTAGTttgaatatgtatttttttttttttactctgtaattTTAGACGTAGCAGCTCCAGTCCACTTAAGTCTAACTGGAATTAATCctgctgtctgtgtgtacatggcatttttgttttttttcttcatttttctttttataatgtGCAATGGAGATGCGCACTTGTGCCTTAGAGACGGGAACTGCAGTGAAGTGGAACTCTCTTAtggttttgtgggttttttttttttttttttttgtttgttttttttttttttataaaaacttGCTCACTCTGTCTATTctctttttcccttctttctgtctcacagcCTCTTTCCTCCTCCATCTTTCTCGGTGTGTACCGAGACGTGGGTGTGTGTTGTACAGATCTCAGACTTTATTTTAACTCGTCTTGTCCATCCTGTTGACGTAAATCGCCGAGCTGCTTCCCCTCTGGAACGGTTccactgtgtatttttaatgatCCGTGATTAATAAGTCATCAAGAGAGTTAAATCTGTAGTGGGATTACTTTCAGTCGTAccctgaattgttttttttttttttttttaaattgtattcaCTGTTGCTTTGTAAATGACAAACGAGATGATTGTAATGAAgcttatagattttttttttaaacatatgtaatattaaaaaaaaaaaaaaaatttagtcaAGACCCCAACAGGTTttagtcagtaaaaaaaaaaaatggagttttGTGTGTCAGCAGAAGGGAATTGTGGGAAAATGAAACACGGTCTTTGTATGCAAAAACACAGCTAAATGATTTTAGACGGACAGCGAGCACACTTTAGCTGCTACACAGTTTGTATAATTATAGATCTCCTCGTAATTCAGTGATCTGAGCGTAATGAGCCATAATAATCGTAGTAGATCTGTGATTGAAAGACGTTTTCAGCTCTGCTTTGTAGACTCTCCTCTACCcttttgatttgcagtgacacatttataaagctgttttgttACGTTTATACTGTTCAGGCAATGCTctcatttctgtctttcctcGTTTCCGTTTCAATAAAAATCCCTCTTCGGTTTATTTAAA

Function

NR:

description
thyroid hormone receptor-associated protein 3-like

GO: NA

KEGG:

id description
K13112 THRAP3; thyroid hormone receptor-associated protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947358.2 True 4056 mRNA 0.48 12 4606321 4631426

Neighbor

gene id symbol gene type direction distance location
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 12733 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 75335 4525615 ~ 4530986 (+)
rragcb rragc,LOC108275365 coding upstream 126827 4468122 ~ 4479494 (+)
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 559673 4009919 ~ 4046648 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding upstream 789698 3702496 ~ 3816623 (+)
si:dkey-206d17.12 LOC108275399 coding downstream 39624 4671050 ~ 4690613 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding downstream 271474 4902900 ~ 4905863 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 783491 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 933895 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 1207200 5838626 ~ 5850058 (+)
G143325 NA non-coding upstream 22361 4583198 ~ 4583960 (+)
G143316 NA non-coding upstream 34683 4523262 ~ 4571638 (+)
G143268 NA non-coding upstream 35612 4568198 ~ 4570709 (+)
G143317 NA non-coding upstream 46934 4523998 ~ 4559387 (+)
G143322 NA non-coding upstream 47903 4557306 ~ 4558418 (+)
G143440 NA non-coding downstream 62958 4694384 ~ 4694861 (+)
G143448 NA non-coding downstream 72136 4703562 ~ 4703783 (+)
G143450 NA non-coding downstream 75481 4706907 ~ 4707152 (+)
G143451 NA non-coding downstream 81774 4713200 ~ 4714103 (+)
G143494 NA non-coding downstream 277894 4909320 ~ 4909523 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 97073 4484833 ~ 4509248 (+)
G142576 NA other upstream 1144150 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1210254 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1797684 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 1109481 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1955785 6587211 ~ 6593605 (+)
G144353 NA other downstream 2148563 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2152090 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 2165546 6796972 ~ 6798904 (+)

Expression


Co-expression Network