si:dkey-206d17.12 (LOC108275399)


Basic Information

Item Value
gene id si:dkey-206d17.12
gene name LOC108275399
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4671050 ~ 4690613 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947390.2
GAGGATAATCTGTGGTCATGCTGatattggtttgtttgtttgtttgtgtcaaTGCGCGGGATTTTTGTTAGATCAGACTTGCTCCTGACTTCTCCCCACTTCCCCGCACACCCTGCCTGCGACCTGTGCTTTTGGAGAAGCGCGGCGCAAACCGGTGGCTACCCAGAAACCCTTTCTGTGCGCCTCCAGGCAAATCCGATTACGCACACTTTCGCAGACGTGTAAACAAATGAGCCTGCTGCAGCTCGTGCACACGAGTGTCTACATGCGCACTCTTTCTGTACACGTCACCGTGGTGTGCTTCCGGAAGGCGGGACCGTGCAGGCTTTAAGAGCGAGTTTTGGCACAGGGCCGCGCTCTGGAGCGACATGGAGACGAAGTGGCACTGCGCTCAAGCTTCTTTCTGATCATTTCCTTCAGAAGTTTCTCACTGACCAGACATGTGACTGGAAAGCCACTTTACGCGCGGTGGTAACTGGAAGCAGAGGATTTCACCTCAATCAGACTACTCAAGTTTCTTCACTTTGGTTAAGGATCGACGCAGATCCCTGAGCAGGTGTGTGCAGTCAGGAGAAGACCTGTTCTGAGTATGAGTATAGGCGCCAGTCTCATCCCTGCTGCCTTTCCTCCAGTTTTGGATAATTTCCTTTGGTCTGATTGttgcagcactgtgtgtgtgtcctccttCGTCCACGCAGACTCACTCACATGGGCGCGTCTTCGCTCCATCCATCCAAACTTTGTGTTAGAATGGAACAAAATCAGCCCGAGGAGCAAGCGGACCTGACCTCTGAATTTCAGTCTCAGCTGGATCTGTTTAGGAAGTTGGGCTTCTCTGATGCTCAGGTCCGAGCTGTGCTACTCAAGCTGGGCCTCCACACCGACACCAACCGGATTCTGGGAGAGCTGATACAGGTGAGAGCGGCAGAGACAGAGGGTTTCCTCGGTCCGCCAGCGCTGGTTCCACATGGTGAAAGTCAGAGGAAAAGTCACAGCATTTCGTCTCTACCTACTGAACAAGAGGACGCAGTCCAGGACGAAGACGCCCTCAAGCCGATAGTGATAGACGGCAGCAACGTAGCGATGAGTCACGGGAACAAGGAAGTTTTCTCCTGCCTGGGAATCCAGCTGGCTGTGAAGTACTTCCTGGATCGAGGGCACACAGATGTTACTGTGTTTGTGCCATCGTGGAGGCGGGAACAACCCAGGCCGGACGTGCCGATCACAGATCAGCAAATTCTTCGTGAGCTGGAGCGGAAAAAGATTCTAGTCTTCACTCCATCAAGGCGCGTGGCAGGAAAGCGGGTGGTGTGCTATGATGACCGCTTCATCGTAAAGCTGGCATATGATGTGGATGGCATCATCGTGTCTAATGATACCTACCGAGACCTGCAGGGGGAAAAACCTGAGTGGAAACGCTTCATAGAGGAGCGGTTGCTCATGTACTCCTTTGTCAATGACAAGTTTATGCTCCCAGATGATCCACTCGGGAGACATGGACCTACTCTGGAAAACTTTCTTCGCAAGACTCCTCGAGCTACTAAGAAACTCCCCTGCCCCTACGGTAAGAAATGCACCTACGGGATCAAGTGTAAGTTCAGCCACCCAGAACGTGGTAAACAATCCCAGCGTTCTTTGGCAGATGAGTTGCGTGAGAAAGCCAAAATGCCCTACTTTCCCCAGAAACCATCCATGGCAGGCCCAAACCCTTCCCAAGGAGCCTCTTTGGAGGAAGTCATGGAGCAAAAACTCACTCTCAATCAAAGTGGTCCACTCAAGAAGACCCACACCAGTGAGAATATGCTGGTGGTGAAGAACACACCACAGTCTACTTCAAGAAAGTCCCCTTCAAAGCGAGATCGTTCCGGACAGTACTCCCCACCAAATCCAGACTGCATCTCTGCTTCATTTCAGGAGTACTTGGACTCGGGCCTGGGCTCGTACGAATGCCACAGTGAGCACCAGTGTGGAGGAGAACAAAGAAAGTCCAAGAATCCTTCTAATGGATGGTTCAGACATCCTCCAACTTGCAGCCAGTCCTTAAACCAATCCAATTTACAATCCAATCCAGGTTACCATCCCCACCACATGAGTATAGCTGCATCCCAAAACCCAAGCAACATGCCATACTCTTACCCTCAATATCACTCCTATGGAGGAGCACCTTACCCACCAGGGAACTTTCCCCAGTATAGCGTACCCCATGAGTACCACCACAGAAGCATGCCTCCGCCTCAAAGTGGCTACTGGTCCGAGCCATACAGACACTTTGGCCATGTGCCTCCAGGACCTGTGCAGGGTGACAACACTCCTTGGAACCATCCAATGCCGGAGAAGGAGCAGGTGAGGAAGAAGCTGCTAGCTGTTTTTAATGCCCGTCTTGTGGACAGAGCAATGGAGATGTTCCCAAACCTAATGGACCCTCAGAAACTGGCTGTGGAAATCATCAACTTGCAGTCATATGAGGGGGTTTTGTGACTTTTGCTGCCTCATGATTGGCTTgtaaaaatgttcacacactagatagtgtgtgcatgtattgTATATTTCTACTGAAACAGTGGGCCACTCGATAATTGCTGTGTAGAATGGTCAGTTTCGGTGAAAGCCTTCTAAGATTATAAGGCTGAAAGTGAATGAGCAGATcattataacattaaataaagcaaatgttTATTGGATATGTATGTTCCACAACTGAAGCCGTGACATacaatttaaattgtttaaagtGACTTTTCCCATCCTTTTACTATTAAGCCCCAaaatctacattaaaaaatgtaatgaataaaacacaacagggtctgctgttatacgaaaatactTAACAACAGGGAGTGTGATGCTCTTGCCTTTGATTATTTAGCTATCCCGTAGTgcttcattcctcttataccatagcgaTTAGTCAGCTgtaacatttttacttttttaatgagatgctttttatccgtttatagttatgtttaatgttgtggaacatcaacaaaacaagttagttcagtTTGAAATTTGTGAATTCATTAgggtaaaaacataaaaaaatctggaaaatgTTTTGGTTATTGGGAAATGTACCCCATTCACACTGGTACATTTGGTTTTGTATGCCTCAAATGCTAACTGATAATGTTAGCATGTTCAAGATTGGGTGTTATCAAAATGCAGTTATTTTGGTAAATGTGTTATTGGTTGCATTGACCAGCCAGCCATAGTGTTTTTATCTGGATTTATTCCTCAGATATTGTTTTATAGGCATGGTGGCATGGAATGGTGTCATAATTGTCGTAATACTGTATATCGACTTATTTATATGTTATGTGTTATATGTTTGCTTTCTATTTTAGGCACCTTAATGATACACATTGTTTAGAATTTCACTGTGGTCTATGTTTTGTAAGTGCATATAGCTTTTAATGTTTAGTTAGTAAATAGCTTTTAAGTGCCTAATATGGTCTGTTGGCACTGTGTGCCTGAAACACCACTGAAAGTCTGAAAACTACCTAAAAGAGGTAGATGAGTGTATGCCCTGTGGGTTCTGGGTATTTTCCCATTCAGTATAATACATTAAATAGTCACATAGTCACTGTCTAATATAAGTCACATGAATTTTCTGTGCCATAGCACTCTGTGTTTACTGACTGTAAGAAACTTTTATGCAAAGCAGGATTGGCATGATTAATAGGATAAAAGCCACATTGACTGCACCCATGCTTAAGTGCTTTTAGCAATGCCAAGCAATATGCAGAAATGCATTTGAGGTTTAAAGTGATTTATGCAGGATTGCTATATTAAACTCCTGCCTCACTGAAGTGCTGCAGTTTGTAAGTGTTCTACAAATGAAATTATGACCTGCTGGCTCTAAACTGTCATGCAATA

Function

NR:

description
PREDICTED: ribonuclease ZC3H12A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947390.2 True 3882 mRNA 0.45 6 4671050 4690613

Neighbor

gene id symbol gene type direction distance location
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 39624 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 77462 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 140064 4525615 ~ 4530986 (+)
rragcb rragc,LOC108275365 coding upstream 191556 4468122 ~ 4479494 (+)
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 624402 4009919 ~ 4046648 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding downstream 212287 4902900 ~ 4905863 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 724304 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 874708 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 1148013 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 1163617 5854230 ~ 5861207 (+)
G143269 NA non-coding upstream 48899 4615242 ~ 4622151 (+)
G143325 NA non-coding upstream 87090 4583198 ~ 4583960 (+)
G143316 NA non-coding upstream 99412 4523262 ~ 4571638 (+)
G143440 NA non-coding downstream 3771 4694384 ~ 4694861 (+)
G143448 NA non-coding downstream 12949 4703562 ~ 4703783 (+)
G143450 NA non-coding downstream 16294 4706907 ~ 4707152 (+)
G143451 NA non-coding downstream 22587 4713200 ~ 4714103 (+)
G143494 NA non-coding downstream 218707 4909320 ~ 4909523 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 161802 4484833 ~ 4509248 (+)
G142576 NA other upstream 1208879 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1274983 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1862413 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 1050294 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1896598 6587211 ~ 6593605 (+)
G144353 NA other downstream 2089376 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2092903 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 2106359 6796972 ~ 6798904 (+)

Expression


Co-expression Network