LOC117597889 (LOC108274445)


Basic Information

Item Value
gene id LOC117597889
gene name LOC108274445
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17840112 ~ 17842564 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307083.1
ATGTGTCATCCCGGTGAGAGAGGACATCATATTTACCTGCTCATTTTAACCTTTTCTGTAAACTTCTACCTCGGCACTGCCTTGTCTCTTCCCCTCACAGCTGCTCCAATCTTTAAGGACACACCTTTTGCAGTCATATGGAACGCACCTACGTATGTGTGCCGAGACCTCAAGATTCCTTTGGACTTTTCTGTCTTTCAAGCAGTGACCACACCAGCCAGTGAACCTAATCAGTTTCTTTTCCTGTTCTACTCCAATCGGCTTGGACTGTACCCATACACCGAGCCTAGCACAGGGAGGCAGTTTAATGGTGGCATTCCACAGAAAGGAAACCTGACAGCCAGCCTTGTGAAAGCCCATAATGATATCATCCAGTATATTCCCGAGTTCACCCCAGGCTTGGCTGTGATTGACTGGGAGGAATGGCGTCCACTGTGGGCCAGGAATTGGGCCTCCAAAGACATCTATCAGAAGCTTTCCATTCAGTAtgcaaaggaaaataatccacttctaTCCCCCAGTGAGGCTGTTTCTGTTGCTAGGCAGCAATTTGAGAACGCAGCCAGGGCTTACATGGAGAAGACCATGCAGCTGGGGATCAAACTGCGTCCAAACTACCTCTGGGGCTTCTACCTGTTTCCAGATTGCTACAACTATGGATGGGGGAATCCAGGCTACACAGGTGAATGCCCAGAGATTGAGAAAAGCCGCAACAATGAGCTCCTTTGGTTGTGGGAGTCCAGTACAGCGTTATTTCCCTCAGCATATTTGCCGGTCAGCCTGAGGGAACAACCTGACGCAGCTCTGTTTGTCCGGGGTCGTGTGAAGGAAGCTGTGAGGGTATCTGCTCTTCCAAAGTCTCTCTACACTGCACCCATTTATGTCTACTTACGTCCAGTCTTCAGTGATCAGAACAAAATATTTCTGAGTGAGGCAGATCTAGTCCATACTATTGGAGAGAGTGCAGCTTTAGGTGCTTCAGGCGTAGTGCTCTGGGGTGCAAGTGCTGACTACAACAGCAAGTCCTCATGTGAAGCACTGGCTGCTTATCTGCCCTCTACACTTAACCCTTATGTGGCCAACGTAACTGCAGCTGCAAAACTCTGCAGTCAGACACTGTGCCAAGGCCACGGTCGCTGCGTCCGCCAGAACCCCGACTCAGCCGACTACCTGTACCTGAACCCAAATAACTTCAGTATTCAGCAGCGTGATGGGAAATATGTGGCTGTTGGTGTGCCTTCCCAAAGTGATCTTAATGTTTTTGTAAACAGGTTTACCTGTCAGTGTTATGTAGGTCAAGTGTGTTCTGCCTACACATCCATTTCAGTGCCCAAGACTCCACTAGTTATTCAAGTGTGA

Function

NR:

description
PREDICTED: hyaluronidase PH-20-like

GO: NA

KEGG:

id description
K01197 hya; hyaluronoglucosaminidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307083.1 True 1359 mRNA 0.49 3 17840112 17842564

Neighbor

gene id symbol gene type direction distance location
LOC117598082 LOC108274445 coding downstream 4669 17833113 ~ 17835443 (-)
LOC113530008 hyal4,LOC108274447,LOC108274446 coding downstream 8343 17827480 ~ 17831769 (-)
LOC113529452 NA coding downstream 80073 17754384 ~ 17760039 (-)
dldh dld,dldh coding downstream 279289 17554092 ~ 17560823 (-)
parp16 parp16,LOC107589319,LOC107595248,LOC107662480 coding downstream 385034 17448608 ~ 17455078 (-)
LOC113530148 hyal4,LOC108436916,LOC108181664,LOC107573489,LOC107752304,LOC107753633 coding upstream 4397 17846961 ~ 17860347 (-)
asb15a asb15 coding upstream 72049 17914613 ~ 17921521 (-)
ptprz1a ptprz1,LOC108274749 coding upstream 270442 18113006 ~ 18164810 (-)
agbl2 agbl2 coding upstream 341547 18184111 ~ 18202625 (-)
lrrc10 lrrc10 coding upstream 373669 18216233 ~ 18218741 (-)
G150551 NA non-coding downstream 80413 17759421 ~ 17759699 (-)
G150495 grm8b non-coding downstream 141028 17698687 ~ 17699084 (-)
G150469 NA non-coding downstream 184323 17655589 ~ 17655789 (-)
G150463 NA non-coding downstream 188232 17651673 ~ 17651880 (-)
G150459 NA non-coding downstream 193167 17646733 ~ 17646945 (-)
G150631 NA non-coding upstream 70076 17912640 ~ 17912855 (-)
G150776 NA non-coding upstream 269688 18112252 ~ 18112477 (-)
G150834 NA non-coding upstream 412511 18255075 ~ 18255418 (-)
G150854 NA non-coding upstream 458729 18301293 ~ 18302959 (-)
G150875 NA non-coding upstream 463645 18306209 ~ 18306443 (-)
LOC113529460 nrg4 other downstream 781206 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 1611778 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1848018 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 2120537 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 2611127 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 362087 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 460578 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 462074 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 511410 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 582755 18425319 ~ 18428973 (-)

Expression


Co-expression Network