LOC113547141 (mchr2,LOC108274669,LOC108436838)


Basic Information

Item Value
gene id LOC113547141
gene name mchr2,LOC108274669,LOC108436838
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5565321 ~ 5582749 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307131.1
CAGGTTATTTCTTGGGTAGGTTTTTTTGGCAGCTCATTTCTTGGGTAGCTCATTTCTTGGGCAGGTTATTTCTTGGGTAGCTCATTTCTTGGGCAGGTTATTTCTTGGGTAGCTCATTTCTTGGATAGGTCATTTCTTGGGCAGAGGATGAACGACTCGGCGGCGTCGTGCGTCTCCGGCGAGCTCTCCAACAGCTCGCTCCCGTGCGCGAACCTCTCGGTGTCCGACTACAACGCGGCGGACGCGGCGTCCTTTACGCACGTCTTCCCCGCCGTGTACGGGATCCTGTGCTTGGTCGGAGTCCTCGCCAACGCGCTGGTGATCTACGCCGTGGCCACGTGCAAGAAGAAGATGGTGTCGGACGTGTACGTGCTGAACCTGGCCGTGGCAGACCTGCTCTTCTTGCTCGTCATGCCCTTCAACATCCACCAGCTGGTGTGGGAGCGTCAGTGGGTCTTCGGCGCGTTCATGTGCAAAGCCGTGGTGGTGGTGGATGTGAGCAACCAGTTCACCACTGTGGGCATCGTCACTGTGCTCTGCATCGACAGGTACATTGCCATCGTCCATCCCATGTCGGAGAACCGCACCATCCAGTggaccatcatcatcaacatgcTGGTGTGGCTTGGCAGTTTCCTGCTCACCATCCCTGTCATGATTTACGCCAAGGTAATCTCCAAGAAGCACTCTAGCGTGTGCATGATATACCTTGATGGTCCCCAGGACATGTACTGGTACACCCTGTACCAGTCTACGCTGGGTTTCCTCGTGcccctcatcatcatcagcacctTCTACTCGCTGACACTGTACCATGTATTCCAGTCGACGCGCCGCGTCAAGCGCAAGCAGTCTCCGTGGGCCAAGAGAGCCACCAAGATGGTTCTGATGGTTATTGCACTCTTCCTGCTGTGCTGGACACCATATCACGTGATCCAGGTGATCAACCTGGGTATCCAACAGCCCACATCGGCCTTTGTCTATGCCTACAACATCAGCATCTGCCTGAGCTACTCGCACAGCTGCATCAACCCGCTCATGCTGCTGATCTTTGCTCAGAACTACCGCGAGCGTCTGTGCCGTCACCGAGAAACACGCAGCAACATGTCCAAGACCACGGTGAAGACTGAGGGATGCTCCAGCATGAGTCCTGATACCGCCCACCGCCTGACCATCATCTAACTCCTGCTTACGCAAACATAAATCCTTATTTGGGTTGTCTATTTAGGGGAACCCTTAACAGCAGAAATCTATAATATAGGAGTTTTGCTGTCAGGAAGGGCGCTAAGAAGAACCCATTCATGAAGCTAAGAACGCTTCATtgtccaaagaacccttttttttttaccaagagTGTAGTATAAGTCGGTCTGCACCACATCAACAAACAGTGTGGAGAGATTGATCAAACTTAACACTGTTTGTCTTCAACTGTTTGTACCTTTCCACCCCTGTATGCTGTAATCTGTAGAAGGGTTCTCTTCTCAAGGGTTCTTTCTTACGTctcctctggtttgctcattatggatctaaatctacagctggatttctgtaaagctgctttgtggcaatgtggCAAtcattaaaagtgctatacaaatgaCTCTCTGCCTTAATTCAGCGTATTTGCTTCATGTAGCTACACTGCACCAACGTCTCTCCACAACTTCTGCACTGGATTTCTCTGGAAAAGGgcgagtgagaaaagaagctctcgCTCGTTTGTGTTTTAGGAGATAACAGAGAAATCTGACAGTTATTGAGATTGTTGAAATTTTTCTCATCGTAACTGCACAAGCAACATCCCCCTGTGACATCTATACCGCAGGCAACTGCTAACGTCTAACATGAATAACAACCAACacattagcaccagaatcactaaacacatcacaaatatttcagtataaacagatTTACTATATTTCGGGGTGGCGTTTTCTTTCAATTCAGCTCTGAGCAAAGTATAGCTGCAGCTATTTCTACAATATGTTGTTAATATGCAGTTtgtggtctgttttttttacattatttgttcattcagtactgttttattttgtgcactCACTACAGGCTTGttgtaaatattgtctttgCACTTCATGGCTACAGGGAAGAAAATGGGCTAAATGATTTGTAACCACTGTTACCAAATTCAGACAACTGTTTGATTTAGCATTTGAATACTATTAAGTGTGTGCGATACTTTCAAAAGCCTTGAACTCAGATGGTTGTTGGTATTTTAGagatgcagcattttttttttaatctttgatgCTACACTAAATGCAGAACTCTATGCATGTGAAGTGTGactgtatcatgttttttttctgtcattttctattcattttcctGTTCTCCCCAGAGGAACTGCAGAACATCTATTCCCAGGGTTAATGAGTTAAGCTTCAGTCATGTGTAACCGGTGATATTTCAACACCCTGACTCGGCACGTTGTAACGCACATAAACAAATGAGTGTATTGGAGCTCAGTTGGAACTGAATGATTAGTGGATGTGATCAGAAAGCGAGTGGATGTGAAAGGTTCACCTGCTCATGGAGATAAACGGATTAGAGATGCTCCAGCATCAAATAGCCTAACAAACTGAATGTTGATGCTGTACGTTCCAGCTATAAATCTGACTAGCACATGGTAGAATGATCGCTTTTTTATCATATGGACAGAATATGATATTGAGCATTTCATGAGATTT
>XM_034307132.1
agctcATATCTTGGATAGGTTATTTCTTGGGTAGCTCATTTCTTGGGTAGCTCATTTCTTGGGCAGGTTATTTCTTGGGCAGGTTATTTCTTGGGCAGGTTATTTCTTGGGTAGGTCACTTGTGCAGCTCATTTCTTGGGCAGCTCGCTTCTTGGGTAGGTTTTTTTGGCAGCTCATTTCTTGGGTAGCTCATTTCTTGGGCAGGTTATTTCTTGGGTAGCTCATTTCTTGGGCAGGTTATTTCTTGGGTAGCTCATTTCTTGGATAGGTCATTTCTTGGGCAGAGGATGAACGACTCGGCGGCGTCGTGCGTCTCCGGCGAGCTCTCCAACAGCTCGCTCCCGTGCGCGAACCTCTCGGTGTCCGACTACAACGCGGCGGACGCGGCGTCCTTTACGCACGTCTTCCCCGCCGTGTACGGGATCCTGTGCTTGGTCGGAGTCCTCGCCAACGCGCTGGTGATCTACGCCGTGGCCACGTGCAAGAAGAAGATGGTGTCGGACGTGTACGTGCTGAACCTGGCCGTGGCAGACCTGCTCTTCTTGCTCGTCATGCCCTTCAACATCCACCAGCTGGTGTGGGAGCGTCAGTGGGTCTTCGGCGCGTTCATGTGCAAAGCCGTGGTGGTGGTGGATGTGAGCAACCAGTTCACCACTGTGGGCATCGTCACTGTGCTCTGCATCGACAGGTACATTGCCATCGTCCATCCCATGTCGGAGAACCGCACCATCCAGTggaccatcatcatcaacatgcTGGTGTGGCTTGGCAGTTTCCTGCTCACCATCCCTGTCATGATTTACGCCAAGTCGACGCGCCGCGTCAAGCGCAAGCAGTCTCCGTGGGCCAAGAGAGCCACCAAGATGGTTCTGATGGTTATTGCACTCTTCCTGCTGTGCTGGACACCATATCACGTGATCCAGGTGATCAACCTGGGTATCCAACAGCCCACATCGGCCTTTGTCTATGCCTACAACATCAGCATCTGCCTGAGCTACTCGCACAGCTGCATCAACCCGCTCATGCTGCTGATCTTTGCTCAGAACTACCGCGAGCGTCTGTGCCGTCACCGAGAAACACGCAGCAACATGTCCAAGACCACGGTGAAGACTGAGGGATGCTCCAGCATGAGTCCTGATACCGCCCACCGCCTGACCATCATCTAACTCCTGCTTACGCAAACATAAATCCTTATTTGGGTTGTCTATTTAGGGGAACCCTTAACAGCAGAAATCTATAATATAGGAGTTTTGCTGTCAGGAAGGGCGCTAAGAAGAACCCATTCATGAAGCTAAGAACGCTTCATtgtccaaagaacccttttttttttaccaagagTGTAGTATAAGTCGGTCTGCACCACATCAACAAACAGTGTGGAGAGATTGATCAAACTTAACACTGTTTGTCTTCAACTGTTTGTACCTTTCCACCCCTGTATGCTGTAATCTGTAGAAGGGTTCTCTTCTCAAGGGTTCTTTCTTACGTctcctctggtttgctcattatggatctaaatctacagctggatttctgtaaagctgctttgtggcaatgtggCAAtcattaaaagtgctatacaaatgaCTCTCTGCCTTAATTCAGCGTATTTGCTTCATGTAGCTACACTGCACCAACGTCTCTCCACAACTTCTGCACTGGATTTCTCTGGAAAAGGgcgagtgagaaaagaagctctcgCTCGTTTGTGTTTTAGGAGATAACAGAGAAATCTGACAGTTATTGAGATTGTTGAAATTTTTCTCATCGTAACTGCACAAGCAACATCCCCCTGTGACATCTATACCGCAGGCAACTGCTAACGTCTAACATGAATAACAACCAACacattagcaccagaatcactaaacacatcacaaatatttcagtataaacagatTTACTATATTTCGGGGTGGCGTTTTCTTTCAATTCAGCTCTGAGCAAAGTATAGCTGCAGCTATTTCTACAATATGTTGTTAATATGCAGTTtgtggtctgttttttttacattatttgttcattcagtactgttttattttgtgcactCACTACAGGCTTGttgtaaatattgtctttgCACTTCATGGCTACAGGGAAGAAAATGGGCTAAATGATTTGTAACCACTGTTACCAAATTCAGACAACTGTTTGATTTAGCATTTGAATACTATTAAGTGTGTGCGATACTTTCAAAAGCCTTGAACTCAGATGGTTGTTGGTATTTTAGagatgcagcattttttttttaatctttgatgCTACACTAAATGCAGAACTCTATGCATGTGAAGTGTGactgtatcatgttttttttctgtcattttctattcattttcctGTTCTCCCCAGAGGAACTGCAGAACATCTATTCCCAGGGTTAATGAGTTAAGCTTCAGTCATGTGTAACCGGTGATATTTCAACACCCTGACTCGGCACGTTGTAACGCACATAAACAAATGAGTGTATTGGAGCTCAGTTGGAACTGAATGATTAGTGGATGTGATCAGAAAGCGAGTGGATGTGAAAGGTTCACCTGCTCATGGAGATAAACGGATTAGAGATGCTCCAGCATCAAATAGCCTAACAAACTGAATGTTGATGCTGTACGTTCCAGCTATAAATCTGACTAGCACATGGTAGAATGATCGCTTTTTTATCATATGGACAGAATATGATATTGAGCATTTCATGAGATTT

Function

symbol description
mchr2 Predicted to enable G protein-coupled peptide receptor activity. Predicted to be involved in neuropeptide signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane.

NR:

description
PREDICTED: melanin-concentrating hormone receptor 2-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04320 MCHR1; melanin-concentrating hormone receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307131.1 True 2717 mRNA 0.46 3 5565416 5582749
XM_034307132.1 False 2701 mRNA 0.46 3 5565321 5582749

Neighbor

gene id symbol gene type direction distance location
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 145161 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 659458 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 874708 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 933895 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 971733 4537496 ~ 4593588 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 255877 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 271481 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 282708 5865457 ~ 5903463 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 384993 5967742 ~ 5975213 (+)
LOC113547108 LOC108274551 coding downstream 415718 5998467 ~ 6037800 (+)
G143577 NA non-coding upstream 73483 5491294 ~ 5491838 (+)
G143569 NA non-coding upstream 78093 5482618 ~ 5487228 (+)
G143566 NA non-coding upstream 111236 5453159 ~ 5454085 (+)
G143559 NA non-coding upstream 138796 5425417 ~ 5426525 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding upstream 188204 5362261 ~ 5377117 (+)
G143601 NA non-coding downstream 17614 5600363 ~ 5604660 (+)
LOC117598079 NA non-coding downstream 27813 5610562 ~ 5613308 (+)
G143622 synpo non-coding downstream 66345 5649094 ~ 5652886 (+)
G143644 NA non-coding downstream 142131 5724880 ~ 5727587 (+)
G143757 NA non-coding downstream 328234 5910983 ~ 5912741 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1056073 4484833 ~ 4509248 (+)
G142576 NA other upstream 2103150 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2169254 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2756684 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 158158 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1004462 6587211 ~ 6593605 (+)
G144353 NA other downstream 1197240 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1200767 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1214223 6796972 ~ 6798904 (+)

Expression


Co-expression Network