LOC117597926


Basic Information

Item Value
gene id LOC117597926
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2270050 ~ 2271586 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307146.1
AGTGGAGGGACtgagggagatagagagagaaagagagagagaattttaaTGGCAGgagatggaaaataaaattgGACATAACAGCATTATGAGTTTTCAGGAGAgaatcacagaaacacagactaAGATGACTGAAAgACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACATGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAGATCGTTAAATTAATACTGGAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAACTCTGATTGTTCAAAActaaa
>XM_034307147.1
ACCTGTCTGCATATTTTGATTCTGGTACAAGTTTTATGACAGATGCCCTttctgacgcaaccctccccattttccaggcttgggaccggcagtgagagagaggaaagactCAGTATGGTTTCCGCACTGAATCAGCTGATGAGCCCGGAAAATGATCACGAGAATTGAGACCGAAAATTTATTCCGAAATTTAATTCCACAGATTGATGCGGAAACTAAACTGTGGATTTATTCCCAAAGATTGAGGCGGAAACTAAACGGCGGATTTATTCCCGAAGATTGAGAGTGAAATTGTGTGCTCTAACATGAACATGAGTGAAGGTGAGAGGAGGAGCGAAGGAGAACTCTGGCTCAACGGGAACTCAGACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACATGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAGATCGTTAAATTAATACTGGAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAACTCTGATTGTTCAAAActaaa
>XR_004578666.1
CAGGAGATCACCTGTCTGCATATTTTGATTCTGGTACAAGTTTTATGACAGATGCCCTttctgacgcaaccctccccattttccaggcttgggaccggcagtgagagagaggaaagactCAGTATGGTTTCCGCACTGAATCAGCTGATGAGCCCGGAAAATGATCACGAGAATTGAGACCGAAAATTTATTCCGAAATTTAATTCCACAGATTGATGCGGAAACTAAACTGTGGATTTATTCCCAAAGATTGAGGCGGAAACTAAACGGCGGATTTATTCCCGAAGATTGAGAGTGAAATTGTGTGCTCTAACATGAACATGAGTGAAGGTGAGAGGAGGAGCGAAGGAGAACTCTGGCTCAACGGGAACTCAGACTGTTAGATTTTTACTGCTTCTACAGCGTTGAGGTTAAATTTTTTTGACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACATGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAGATCGTTAAATTAATACTGGAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAACTCTGATTGTTCAAAActaaa
>XR_004578667.1
CCAGTGTTGGCAGTCGTTTAGTGGAGGGACtgagggagatagagagagaaagagagagagaattttaaTGGCAGgagatggaaaataaaattgGACATAACAGCATTATGAGTTTTCAGGAGAgaatcacagaaacacagactaAGATGACTGAAAgACTGTTAGATTTTTACTGCTTCTACAGCGTTGAGGTTAAATTTTTTTGACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACATGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAGATCGTTAAATTAATACTGGAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAACTCTGATTGTTCAAAActaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307146.1 False 653 mRNA 0.43 3 2270469 2271586
XM_034307147.1 False 881 mRNA 0.45 3 2270059 2271586
XR_004578666.1 True 938 misc_RNA 0.44 4 2270050 2271586
XR_004578667.1 False 720 misc_RNA 0.43 4 2270450 2271586

Neighbor

gene id symbol gene type direction distance location
LOC117598027 NA coding upstream 10576 2257540 ~ 2259474 (+)
LOC113545612 NA coding upstream 14214 2249486 ~ 2255836 (+)
LOC113545586 NA coding upstream 30751 2226921 ~ 2239299 (+)
lgals17 LOC108274834 coding upstream 52608 2206923 ~ 2217442 (+)
LOC113545587 LOC108274833 coding upstream 74449 2184723 ~ 2195601 (+)
LOC117598176 NA coding downstream 2005 2273591 ~ 2274763 (+)
LOC117598177 NA coding downstream 5413 2276999 ~ 2277996 (+)
LOC117598175 NA coding downstream 21803 2293389 ~ 2294516 (+)
LOC117598085 NA coding downstream 29780 2301366 ~ 2302762 (+)
LOC117598106 NA coding downstream 103113 2374699 ~ 2383793 (+)
LOC113545551 NA non-coding upstream 43254 2220567 ~ 2226796 (+)
G142305 NA non-coding upstream 144654 2084785 ~ 2125396 (+)
G142302 NA non-coding upstream 166121 2054999 ~ 2103929 (+)
G142301 NA non-coding upstream 217359 2052458 ~ 2052691 (+)
LOC117598183 NA non-coding upstream 247910 2018809 ~ 2022140 (+)
G142391 NA non-coding downstream 8774 2280360 ~ 2286141 (+)
G142385 NA non-coding downstream 27398 2298984 ~ 2301918 (+)
LOC117598178 NA non-coding downstream 27590 2299176 ~ 2300055 (+)
G142411 NA non-coding downstream 87213 2358799 ~ 2359457 (+)
G142429 NA non-coding downstream 100538 2372124 ~ 2372355 (+)
LOC113545687 NA other upstream 86997 2069238 ~ 2183053 (+)
LOC113524920 NA other upstream 184172 2055031 ~ 2085878 (+)
LOC113523891 ehmt2 other upstream 647260 1615143 ~ 1622790 (+)
G142093 LOC108274838 other upstream 656714 1611511 ~ 1613336 (+)
dus3l dus3l other upstream 710140 1548257 ~ 1559910 (+)
LOC117598179 NA other downstream 7493 2279079 ~ 2279887 (+)
LOC117598174 NA other downstream 16512 2288098 ~ 2291206 (+)
LOC117598173 NA other downstream 23573 2295159 ~ 2297706 (+)
LOC117595676 LOC108274861 other downstream 63623 2335209 ~ 2357993 (+)
LOC117598105 NA other downstream 101637 2373223 ~ 2558727 (+)

Expression


Co-expression Network