LOC117597937 (lrrtm2,LOC108274667,LOC107750357,LOC107680618)


Basic Information

Item Value
gene id LOC117597937
gene name lrrtm2,LOC108274667,LOC107750357,LOC107680618
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4902900 ~ 4905863 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307199.1
CCAGCTGACTAGCTGGGgagagaggcagtgagagatttacagtgttcatttcaGCTGTGATTTTCCACACAACGAGCTGAAATGATCAATATTCAGATGATGACgcatcaaagaaaaaaatgcagaggaAAGAGTGAATCAAATGGGCAAGCATATTGCAAGTGCGAGGCAGAAAGCAAGTGAGAAAGGGAGTGGAGAGAcagtgcaagagagagagagaaagagcacaaGCCAGAATGAGCTAGCGAGAGAGGGATAAATGGCACGGATGATCGACAACACTTTGCTGTCTGCAGCTTGCTAGCTTTCAGCCCACGGCTCTGGAGAAAACCCAAAATATACCATGGAATTTCTTAATTTGTTTCAGATCAGGAGGCTTGGTATTTCTTTACTACTTTTTGCATTCACTCCATTGGCTTTTTTCCCCTTGGATTTGTCCTTCGTCTGGCTTTTCCAGAAGTCTGCAGAAAAGGACAGTTGAATGCAGTCACTGATGTTCACAAAAGAATGGgttttcattccaaggTGGCCATTGGCGGGACAAGCACCAGCAGCACTTTGTGTAATCAGCATGCTACTGTGCCTCCCTCCTGCGTCATGCACAGCCTGCCCACAGAAATGCCGTTGCGAGGACCTGCAGTTTTACTGCGACACGCAGGGACTCCTGGCGCCCCCAGATGGCGTGGACAGAGGAGCCCTTGGACTCTCGCTCCGGCACAACAGCTTCACCGAGCTGAGCCCTGACCAATTTTTTGGCTTCACCCAGCTAACCTGGCTCCATTTGGACCATAACCAAATACTCAACGTGCATGAAGATGCCTTCCAGGGGCTTTACAAGCTCAAGGACCTGAACCTGAGCTCCAACCGCATCACTAAGCTGCCCAACACAACCTTCATCCACCTTATCAACCTCCAAATCCTGGATCTATCCTTTAACCAGATGACTGCACTGGAGCCTGAGCTCTTTCATGGGCTTCGGAAGCTCCAGATCCTCCATCTGAGGTCCAATTTACTGAGGACTATGCCTGTGCGAGCCTTCTGGGACTGCTGGAGTCTGGAGTACCTTGGTTTAAGCAACAACCGGCTTCGGAGCCTGGCGCGGAATGGATTCGCTGGGCTAATAAAGCTACAGGAACTCCATTTGGAACACAACCACTTGACCAAGATCAATCTGGCCCACTTCCCACGTCTTGTCACCCTCCAGTTCCTCTATCTGCAATGGAACAAGATTAACAATTTAACATGTACCATGGAGTGGGAGTGGACCACTCTGGAAAAACTGGATCTAACTGGGAATGAGATACGCACGCTAACCCCTGAAGTGTTTGAAACTTTACCAAACCTTAAGGTTCTGCTGCTGGATAACAACAAGTTGACCAGCCTTGATACCCAAACCACGGATATGTGGAAGTCTCTGAACACCATCGGGTTGTCCAGCAACCTTTGGGAATGTACCAATAGAATCTGCAACTTGGCCAGTTGGCTTAGTAAGTTTAAGGGTCGATGGGAGCAATCCATCCTATGCCACAGTCCTGAGTACACACAGGGTGAGGAAATACTAGATGCTGTTCATGGATTCCAACTCTGTCAAAACATCTTAGCGCCTATTGCACCGACCAGCACTACGAGGGAGGCCACGTTACCCCAACAATTCACTAGATCTTTGTTTGGGAATATGCAGACACCAACACAGGACTTCTATGCAGAGAATTTGGGGAGCTTTAGTATTTTCACCACTGCTGCCAAAACCCCACAAACTACTGTTTCTACAACTACAGATGAGATGGAAGATGTTACTGATGACTCTGCTCTGATGGACAACATGGTACTAACCCAGACAATAATTGTAGGTACCAtggctcttttgtttttcttttttctcatcaTTTTCATAGTGTACATCTCTTGGAAGTGCTGCCCACACTCTATACGACGAACCCACCACTGCTTGACCATTCAGAATAGACAGCAGAACCAGACACAAGAAAGGCAGCCGATGGCAGACCCAGCCACACAGTTGCCctataatgaatatgagctgaCTCACAACGACGGTGCACTTGTAATCATAAATGGCTACGGGCAGTGCAAGTGTCAGCAACCATCTTACAAAGAGTGTGAAGTATAAACACTATTTATTTACTCAGATGATTGGTTGACCATTTTGACCATTTCAGATAATACAAGATTTGTTTATGAATATTTCagtttgtaaagaaaaatgaaatacatgcTTTTTTCCTGGCTTtgaaattcaataaaaatgtgaaGG

Function

symbol description
lrrtm2 Enables identical protein binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in basal plate midbrain region and nervous system. Orthologous to human LRRTM2 (leucine rich repeat transmembrane neuronal 2).

NR:

description
PREDICTED: leucine-rich repeat transmembrane neuronal protein 2-like

GO: NA

KEGG:

id description
K16665 LRRTM1_2; leucine-rich repeat transmembrane neuronal protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307199.1 True 2272 mRNA 0.46 2 4902900 4905863

Neighbor

gene id symbol gene type direction distance location
si:dkey-206d17.12 LOC108275399 coding upstream 212287 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 271474 4606321 ~ 4631426 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding upstream 309312 4537496 ~ 4593588 (+)
stpg1 stpg1 coding upstream 371914 4525615 ~ 4530986 (+)
rragcb rragc,LOC108275365 coding upstream 423406 4468122 ~ 4479494 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding downstream 509054 5414917 ~ 5420160 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding downstream 659458 5565321 ~ 5582749 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 932763 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 948367 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 959594 5865457 ~ 5903463 (+)
G143451 NA non-coding upstream 188797 4713200 ~ 4714103 (+)
G143450 NA non-coding upstream 195748 4706907 ~ 4707152 (+)
G143448 NA non-coding upstream 199117 4703562 ~ 4703783 (+)
G143440 NA non-coding upstream 208039 4694384 ~ 4694861 (+)
G143269 NA non-coding upstream 280749 4615242 ~ 4622151 (+)
G143494 NA non-coding downstream 3457 4909320 ~ 4909523 (+)
G143510 NA non-coding downstream 204846 5110709 ~ 5111040 (+)
LOC117598093 NA non-coding downstream 286198 5192061 ~ 5194949 (+)
G143529 NA non-coding downstream 452776 5358639 ~ 5375744 (+)
G143532 ctnna1,LOC107594905,LOC107680619 non-coding downstream 456398 5362261 ~ 5377117 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 393652 4484833 ~ 4509248 (+)
G142576 NA other upstream 1440729 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1506833 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2094263 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 835044 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 1681348 6587211 ~ 6593605 (+)
G144353 NA other downstream 1874126 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1877653 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1891109 6796972 ~ 6798904 (+)

Expression


Co-expression Network