LOC113547149 (LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219)


Basic Information

Item Value
gene id LOC113547149
gene name LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6025796 ~ 6034619 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307234.1
atggaagaagaagaagaagaagaagaagaaggcgcAGAAGAAGAATTCACAAGAGAAGAAGAAGGCCCTCTCCGTATGGAaatatttctgacaggattcctcagaaaaaaaaaaaagttagaccTGAAGAGGTTGACAGCAGAAGCTCGCTGAGGTTTTGACTCCAAGAATCACGTCTTCTAATGGAGTCACCAGAGCTTTGTGAGAATATGAAAACTGAGTTTTGCATGACTTCAGATGGGGGGACATCAGACTCTGTGAGATTTGTTATCCCTATCCCTGTGGATCAACAGAAGCctgtaaaaaaagaagaacctgAAGATGAAGGCTATGTCTGTAAGATGACAACAGAGTATTGCTCAGTAAAACAAAATGGAGGGCCATCAAGCCCTGTGGAATGTATCATCACTACTGACCAACAGACTGGAGGATTCCAGAGGAAACCTATAAAAGAGGAAGAACCTGAAGATGATGAATTCCTCTACTGTGAGGACTGCAGATCCTACTTCATCAACAAGTGTGAGGTTCACGGTCCTGCTCTTTTCATCTCTGATACCCCTGTTCCCATGGGGATTGCTGACCGAGCAATACAAACCCTTCCCCTCGGTCTAGAGGTTGGAAAGTCTGACATTCCTGATGCAGGCCTTGGGGTGTTCAATAAGGGGGAGACTATTCCACTTGGTGCACACTTTGGGCCCTATGAGGGAGACCTGGTGGACAGAGAGGAAGCCATGAATAGTGGCTATTCTTGGGTGGTATGTGAATTGTGCTCGTAATGAAGAAGAACAGAATCTTGTAGCATTCCAGTATCAAGGAGGCATCCTCTACTGTTGCTGTCAACCCATCAAAACCGGACAAGAGCTCTTGATGTG

Function

NR:

description
PREDICTED: zinc finger protein 91-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307234.1 True 872 mRNA 0.45 6 6025796 6034619

Neighbor

gene id symbol gene type direction distance location
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding upstream 50583 5967742 ~ 5975213 (+)
n4bp3 LOC108274652 coding upstream 122333 5865457 ~ 5903463 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding upstream 164589 5854230 ~ 5861207 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding upstream 175738 5838626 ~ 5850058 (+)
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 443047 5565321 ~ 5582749 (+)
LOC113547147 LOC108274655 coding downstream 5109 6039728 ~ 6075245 (+)
lingo4a LOC108274662 coding downstream 43298 6077917 ~ 6086079 (+)
scn1bb LOC108274487,LOC107669127 coding downstream 74244 6108863 ~ 6117537 (+)
syngap1a syngap1a,LOC108275193,LOC108439800 coding downstream 85997 6120616 ~ 6247705 (+)
ndufb9 ndufb9 coding downstream 263147 6297766 ~ 6302565 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding upstream 41418 5978102 ~ 5984378 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding upstream 89467 5932581 ~ 5936329 (+)
G143766 NA non-coding upstream 102044 5922811 ~ 5923752 (+)
G143757 NA non-coding upstream 113055 5910983 ~ 5912741 (+)
G143644 NA non-coding upstream 298209 5724880 ~ 5727587 (+)
G143987 NA non-coding downstream 321698 6356317 ~ 6357920 (+)
LOC113547099 NA non-coding downstream 387517 6422136 ~ 6428434 (+)
G144221 NA non-coding downstream 509753 6544372 ~ 6544916 (+)
G144256 NA non-coding downstream 593732 6628351 ~ 6684107 (+)
G144359 NA non-coding downstream 773352 6807971 ~ 6826908 (+)
gpx3 gpx3 other upstream 277852 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1516548 4484833 ~ 4509248 (+)
G142576 NA other upstream 2563625 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2629729 3384180 ~ 3396067 (+)
LOC117598057 NA other upstream 3332954 2687795 ~ 2692842 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 552592 6587211 ~ 6593605 (+)
G144353 NA other downstream 745370 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 748897 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 762353 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 916453 6951072 ~ 6951422 (+)

Expression


Co-expression Network