LOC117598003 (LOC108275059,LOC107754490,LOC107660898)


Basic Information

Item Value
gene id LOC117598003
gene name LOC108275059,LOC107754490,LOC107660898
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10573619 ~ 10576056 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307265.1
GATAAACGCCGAGATCTTAATGTGAAACAATGGAAGGTGCGATGAAACCACAGCTGCGCAGCTACGCGTCAGCCTTCCTTCTTTTTGCATCTTTCTTATGCGGAGTGTCTGCTGTTACTCACTATTCTATCCCTGAAGAAATGAAGGAAGGATCCGTTGTGGCAAATTTAGCTGCAGATTTGGGACTGGACGTGAAAACCATGAGCAGTCGAAAAATGAGGTTAGAcgttatttcaaataaaaaatacctTGAAATAAACAAAGAGACTGGTGAgctttatattttggaaaaaatggaTAGAGAGTACCTTTGTTCTAAGACAACAACATGCTTCATCAAAATAGAGGTTACACTTGAGAATCCGGTAAgaatatttaatatagaaattGAAATTGTGGATATAAATGACAACGCACCCCGGTTTCGGCGGGATACAATTCATTTGGATATCTCAGAGTCCACTTCTGAGGGTGAGCGATTTTCTCTTAGTAACGCAGTTGACCCTGATATAGGAACGAATTCTATTAAAACGTACCATTTGAGTGAGAGCGAATATTTTGATATCGAAATGCAGACTGGTAGAGACGGTGCCAAGTTTGCTGATTTAATTCTCAGACAGGTTttggacagagagacacaggcaGTGCACAGTCTGATCCTTACTGCTGTAGATGGCGGAGTGCCAGCGCGCTCCGGCACAGCCAGCATTATAGTGCGGGTGCTGGACACAAATGACAACGCCCCTAAATTTGACAAAGAAAGTTATACAATACATTTAATGGAAAACTCCCCAATTGGAAACCTTGTAGTGAAGTTAAACGCAACGGATCTTGATGAGGGATCCAATTCAGATATTGCTTATTCGTTTAGTCTTTACACATCTGAGAAGACACAGGAAACGTTTAGTTTAAACCCTAATAATGGTGAGATTAGAGTTAAAGGAGTTATTAATTACGAGGATTTCAGGATCTATGACATGGAGATAATAGCAACAGATAAGGGAGTGAGCAGTCTGTCTGGACAATGCAAAGTAACAATTTTAGTGACAGATATGAACGATAATCATCCGGAAATATCTATAAAATCATTCTCGAATCCAATTAAAGAGGATGTATCTGTAGATACAGTTATTGCCGTAGTTAGTGTAAGTGATAAAGATTCAGGAGAAAATGGCCAGCTTGACATTCATATTTCTGAAAAGTTACCTTTTGCATTGAAAGAATCATCAGATAATTATTACCAGCTCGTAGTTTCAGAACCACTGGACCGTGAAAAGGTTGCAGAATATGACATCACATTTACTGTTACTGACAGAGGAAACCCTCCTTTATCTGATAATGAAACTGTAACTCTAGAGCTGCTGGACGTTAATGACAATGTGCCACGATTTTCTAAAAAAACTTATACCATACAGGttatggaaaataatccacctggAGCATTGCTGAGTTCTTTAACTGCTATTGATCCAGATCTCCATGAAAATCAGtatcttgtttattttataatagaaaaagaaatagcTAACACCTCCATGTCCATGCTCTTCTCCATTAATCCAGAGAACGGTAACCTTTACGCATTAAAGACATTTGATTATGAGATAGAGAAAGAGTTTCTTTTTCACATCGAGGCCAGAGACTCTGGTGTTCCTCCACTCAGCAGTAACGTTACGGTTCACATTATTATCATGGATCAGAATGACAACACACCGGTTATAGTGTCTCCATGGCGCGCGCACGGCTCAGTGGTGGAGGAGAAAATACCGAGATCCACTGATAAAGGAACTCTGATAGCCAAAGTAATTGCTATAGACACAGACTCTGTTCACAACTCCAGGATTACTTACCAATTTCTCCAGAACACTGACGCTACTTTATTCAGTTTGGACCAGTACAATGGAGAGATCCGGACCACGAGAATGTTCAGTTACAGAGACTCGCGCTACCAGCGGCTGGTGGTGATCGCCAAGGATAACGGAGATCCGTCTCTCTCTGCTACAGTCACCATCAAACTGTCCACGGTGGAGACCGCGCTTAAAAGCTATGCTGACATGACTGAAGTGCCTTTAGAATATGACAtcttttcagatttaaacctgtaTCTTGTGATCGGACTGGGCTCAGTGTCATTCCTGTTACTCATCACCATATTGGTGACCATCGTGCTGAAGTGTCAGAAACCGAAGCCCAGTAAAGCTGCTCCTCCCTGTAGGAACAGTGTGATCAGTGAGAGGAACTCTACCATCGCAGATTCCACTCTGGTGTCCAACGATGCCTACTGGTACAGTTTATTTCTAGCAGAGACCAGAAAAGGAAAGCTGGTAGTTAGACAACCTGTGCCAAAGGGGACGAGATACATTGTGTCTAGTATACCGAGGGGCACAGGCCTGACTGAGACTAGTGACTCAGCTGCATCTACTTTACAGGTAATttga

Function

NR:

description
PREDICTED: protocadherin alpha-C2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307265.1 True 2438 mRNA 0.41 1 10573619 10576056

Neighbor

gene id symbol gene type direction distance location
LOC117598002 LOC108275059,LOC107660898 coding upstream 523 10567553 ~ 10573096 (+)
LOC117598040 LOC107596395,LOC107660898,LOC108275059,LOC106596699 coding upstream 6520 10562063 ~ 10567099 (+)
LOC117598004 LOC107596395,LOC108274580 coding upstream 13453 10558330 ~ 10560166 (+)
pcdhb LOC108275060,LOC108430951,LOC107754491,LOC107747094,LOC107596358 coding upstream 15793 10555300 ~ 10557826 (+)
fgf18a fgf18a,LOC108274431,LOC103029481,LOC108430953,LOC105893086,LOC107747128,LOC107660900 coding upstream 47709 10508813 ~ 10525910 (+)
LOC117598041 LOC108274579,LOC108430928 coding downstream 21122 10597178 ~ 10599659 (+)
LOC113529867 LOC108274577 coding downstream 24419 10600475 ~ 10607529 (+)
LOC117598042 LOC108274576 coding downstream 31364 10607420 ~ 10609896 (+)
LOC117598043 LOC108274575,LOC101884096 coding downstream 35841 10611897 ~ 10617253 (+)
LOC117595700 LOC108430926 coding downstream 42414 10618470 ~ 10623013 (+)
G146168 NA non-coding upstream 46761 10526543 ~ 10526858 (+)
G146141 NA non-coding upstream 122596 10450676 ~ 10451023 (+)
G145966 NA non-coding upstream 362124 10208004 ~ 10211495 (+)
LOC113530164 NA non-coding upstream 383426 10170715 ~ 10190193 (+)
G145950 NA non-coding upstream 469431 10103985 ~ 10104188 (+)
LOC113529600 NA non-coding downstream 179853 10755909 ~ 10758807 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding downstream 319685 10895741 ~ 10896384 (+)
G146308 NA non-coding downstream 440039 11016095 ~ 11017354 (+)
G146377 NA non-coding downstream 475160 11051216 ~ 11051420 (+)
G146380 NA non-coding downstream 477111 11053167 ~ 11053425 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 25690 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 1731353 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3107067 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3617103 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 3620746 6952802 ~ 6952873 (+)
hrh2a LOC108274475 other downstream 719072 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1019443 11595499 ~ 11597970 (+)
G147542 NA other downstream 2340863 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2773267 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2796816 13372872 ~ 13389196 (+)

Expression


Co-expression Network