pcdhb (LOC108275060,LOC108430951,LOC107754491,LOC107747094,LOC107596358)


Basic Information

Item Value
gene id pcdhb
gene name LOC108275060,LOC108430951,LOC107754491,LOC107747094,LOC107596358
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10555300 ~ 10557826 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307266.1
ACTCTCCGTGATCTCATTTCGCAGTTTGTATATTTTAGGTACCCAAGTAACACTGTAGTCTAAGAAAACTTTTAGAGAGGAGACACATTACCGGAAGCCTTGAAAGTGATTTTTGGCCGGGAGAATGAAGACTGTAGGATCTATGTGCTGTGTGATggttttctttgtattttcGGCGACATGGAAATCGGCTTTGTCTGTCACGCGTTACTCTATAccggaggagatggagagagggtcTGTTGTTGCTAATCTAGCTGCAGACTTGGGACTGGACTTAGGGGCTCTAGCTCAACGAGAGGTAAAGTTagatatatttaataacaaaaaattcTTAGATGTTAATAAGAAAACTGGGGAGCTGTACATTATTGAAAGAATAGATAGAGAAGGGATATGTCAGGCCAAAACGTCAAATTGTTTTATCAAACTAGATATGATAATCAAAAGCCCATTACgtatttttaatattgaattAGAAATCACAGATATCAATGATAATGCTCCACATTTTAGAATGGACAGGGTAGAACTGGATGTGTCCGAGTCTGCATCACCAGGTGAAAGATTTTCTTTGCCCAATGCACAAGACCCGGATGTAGGGGCGAACACTGTAAATACTTACAAAATTAGCGAAAGTGATCATTTTACAATAGATATTCATTCTGGTAGTGATGGTACAAAATATGTCGACATGGTCCTTATGAAAGAATTAGACAGGGAAGTACAGCCTATTCATAATCTCATTCTCACTGCTGTAGACGGCGGTGTCCCTGCGCGCTCCGGAACTGCCAATATCATTGTTCATGTGCTGGATACAAACGACAACGCCCCTCAGTTTGACCGCTCAGTGTACACCGTAAAAATGAGTGAGAATTCCCCTATTGGAACGGTTGTTACTAAACTAAACGCAACTGATACTGATGAAGGCTCAAACGCAGACATAACATATTCATTTACGCTTTATACCTCAGAAAAAACGCAAGAAATGTTCAATTTGAATTCAAAAACTGGCGAAATAACTGTTAAAGGCACTATAGATTTCGAAGACATGAAAATATATGAACTGCATGTAGAGGCCAAAGATAACGGTCCTGTTCCGCTCTCCAGTCAGTGCAGAATAACAGTGGATATTATGGATATGAACGATAATTATCCAGAGATAACCATCAAatcactgaagaacactgtgAAAGAGGACACTCCTGTAGGCACAGTCATAGCCCTTGTAGGTGTAAGCGACAGAGACACTGGGGATAATGGCAAGGTTAATCtcacaataaacaaaaatatcccATTCACTCTAAATAAATCATCTGACTATCACTACGAGCTGCTAATCTCGGAACCATTAGATCGAGAAATAACTCCGGAATATGATATTTCTTTAGTagtgacagacagaggaaaTCCTCCACTGTCTGACAATGAAACTATAATAGTGCACTTACTGGACGTTAATGATAACGCACCTCAGTTCCCACAGAGTTTCTACAGCATATCTGTTACGGAAAACAATCCTCCCGGGGCTTTGTTAAGCTCTATAACTGCCCATGACCCAGATTTACATGAAAATCAGTATCTAGTGTATTTCATAATAGAAAGGGAAATAGCAAACACCTCCATGTCCATGCTCTTCTCCATTAATCCAGAGAACGGTAACCTTTACGCATTAAAGACATTTGATTATGAGATAGAGAAGGAGTTTCTTTTCCACGTCGAGGCCAGAGATTCTGGTGTTCCTCCACTCAGCAGTAACGTGACAGTTCACATTATTATCATGGACCAGAACGACAACACACCGGTTATAGTGTCTCCATGGCGCGCGCACGGCTCAGTGGTGGAGGAGAAAATACCGAGATCCACTGATAAAGGAACTCTGATAGCCAAAGTAATTGCTATAGACACAGACTCTGTTCACAACTCCAGGATTACTTACCAATTTCTCCAGAACACTGACGCTACATTATTCAGTCTGGACCAGTACAATGGAGAGATCCGGACCACGAGAATGTTCAGTTACAGAGACTCGCGCTACCAGCGGCTGGTGGTGATCGCCAAGGATAACGGAGATCCGTCTCTCTCTGCTACAGTCACCATCAAACTGTCCACGGTGGAGACCGCGCTTAAAAGCTATGCTGACATGACTGAAGTGCCTTTAGAATATGACAtcttttcagatttaaacctgtaTCTGGTAATCGGACTGGGCTCAGTGTCATTCCTGTTACTCATCACCATATTGGTGACCATCGTGCTGAAGTGTCAGAAACCGAAGCCCAGTAAAGCTGCTCCTCCCTGTAGGAACAGTGTGATCAGTGAGAGGAACTCTACCATCGCAGATTCCACTCTGGTGTCCAACGATGCCTACTGGTACAGTTTATTTCTAGCAGAGACCAGAAAAGGAAAGCTGGTAGTTAGACAACCTGTGCCAAAGGGGACGAGATACATAGTGTCCAGTATACCGAGGAGCACAGGACTGACTGAGACTAGTGACTCAGCTGCATCCACTTTACAGGTATGGTAG

Function

NR:

description
PREDICTED: protocadherin alpha-C2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307266.1 True 2527 mRNA 0.42 1 10555300 10557826

Neighbor

gene id symbol gene type direction distance location
fgf18a fgf18a,LOC108274431,LOC103029481,LOC108430953,LOC105893086,LOC107747128,LOC107660900 coding upstream 29390 10508813 ~ 10525910 (+)
fbxw11a fbxw11a,fbxw11,LOC108275024,LOC108430955,LOC105893085,LOC107655672,LOC107588312,LOC107660901,LOC107754486,LOC107747095 coding upstream 84021 10452347 ~ 10471279 (+)
etf1a etf1,LOC108275025,LOC108430956 coding upstream 107088 10434947 ~ 10448212 (+)
bicc2 LOC108274692 coding upstream 536367 9997288 ~ 10018933 (+)
ndst1a ndst1,LOC108274691,LOC108430959,LOC102795901 coding upstream 568885 9918102 ~ 9986415 (+)
LOC117598004 LOC107596395,LOC108274580 coding downstream 504 10558330 ~ 10560166 (+)
LOC117598040 LOC107596395,LOC107660898,LOC108275059,LOC106596699 coding downstream 4237 10562063 ~ 10567099 (+)
LOC117598002 LOC108275059,LOC107660898 coding downstream 9727 10567553 ~ 10573096 (+)
LOC117598003 LOC108275059,LOC107754490,LOC107660898 coding downstream 15793 10573619 ~ 10576056 (+)
LOC117598041 LOC108274579,LOC108430928 coding downstream 39352 10597178 ~ 10599659 (+)
G146168 NA non-coding upstream 28442 10526543 ~ 10526858 (+)
G146141 NA non-coding upstream 104277 10450676 ~ 10451023 (+)
G145966 NA non-coding upstream 343805 10208004 ~ 10211495 (+)
LOC113530164 NA non-coding upstream 365107 10170715 ~ 10190193 (+)
G145950 NA non-coding upstream 451112 10103985 ~ 10104188 (+)
LOC113529600 NA non-coding downstream 198083 10755909 ~ 10758807 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding downstream 337915 10895741 ~ 10896384 (+)
G146308 NA non-coding downstream 458269 11016095 ~ 11017354 (+)
G146377 NA non-coding downstream 493390 11051216 ~ 11051420 (+)
G146380 NA non-coding downstream 495341 11053167 ~ 11053425 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 7371 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 1713034 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3088748 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3598784 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 3602427 6952802 ~ 6952873 (+)
hrh2a LOC108274475 other downstream 737302 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1037673 11595499 ~ 11597970 (+)
G147542 NA other downstream 2359093 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2791497 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2815046 13372872 ~ 13389196 (+)

Expression


Co-expression Network