LOC117598004 (LOC107596395,LOC108274580)


Basic Information

Item Value
gene id LOC117598004
gene name LOC107596395,LOC108274580
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10558330 ~ 10560166 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307267.1
GCTGTAATCCAGAAAAGCACATGGGATGTCCACTGGGCGTATGCGCCTGTCGCCATCACAGTTGATCACTGAGCGATGAGAAAGAGCATCGTGTGCTTAACAGGATTTACACTAATTACTGAAATCCCGCTTTAAGCACCctgtttattttctcaaaaAGAGACATTATTCAGCAACATCTATTTCGTCTCCTTATTGGATTTTGAGGTCCTGTAGTGAAGTCACTGGTTTTTGCAACACAAAACGATAGAAGGAGACAATGGGGGTTCATATGAACGCGCGGTGCTGGAGAAGGTACGTCTCGGGTGTTATCTTATTCTCTGCCATGATTCACACATCGTTCACTGTAACTCACTATTCTATCCCTGAAGAGATGGAAGAAGGATCCGTGGTTGCAAATCTAGCCACCGATTTAGGACTGGATTTAGATACTTTGATTAAACGAAAGGTTCGTCTTGATGTTATTGCTAATAAGAAATATCTCGACATAAACAAAGAGAAAGGAGAGCTCTACATATTAGAAAAGATTGATCGTGAGCATCTGTGTCCTGCTAAAACgacttgttttttaaaaatggaagtgATTGTGGAGAATCCTGTGCGCATATTTTACATAGAATTAGAAATAACTGATATTAATGACAATAATCCTCATTTCCGACGCGACACTATTCATCTGGACATTTTGGAATCGACGCCAGCAGGTGAAAGATTTTCTGTCAGTAATGCGGTGGATTCTGACGTTGGGTCCAATTCGGTTAAAACATACTATCTAAGTGAAAACGATCACTTTGGCATAGAGATACAGTCTGGCAGAGACGGCTCTAAATTTGctgatttaattttgaaaaagaCGTTGGACCGTGAAGTTCAAGCTGTCCATAATCTGATACTTACTGCTGTGGATGGCGGAGTTCCTGCGCGCTCTGGTACAGCCAGCATCATTGTTCGAGTGCAGGATGCAAATGACAACGCACCCAAGTTTGATCGGGAAAGCTATACAATCAATGTCACAGAGAACTCCCCTATAGGAAGCCTCGTCGTTAAACTAAATGCAACCGACTTAGATGAAGGCTCTAACTCAGATATTATATACTCTTTCGGCCTATATACGTCGGAAAAGGCACAAGAGGCTTTTAGTTTAAGCCCAGGCACTGGTGAGATAAGAGTTaaagaaatgattaattatGAGGATTTCCGAATTTATAACATGGAGATTATAGCAAAGGATAAAGGTACTAATTCATTATCAGGACAGTGTAAAGTAACCATTATGATTACAGACATGAATGACAATCATCCAGAAATTTCAGTACGATCTTTTTCAAATCCGGTTAAAGAAGACATCGCTGTAGGTACAGTTATTGCAGTGATTAGTGTAAGTGATAAAGACTCGGGTGAGAACGGCCAAATTGACCTTCACATTCCTGATAATTTACCGTTTGCACTTAAAGAATCATCTGAAAATTATTACCAGCTGGTGGTATCTGAACCATTGGACCGTGAAAAAGTATCAGAATATGACATCACATTTACTGTTACTGACAGAGGAAACCCTCCGTTATCTGATAACGAAACTGTAACTCTAGAGCTGCTAGACGTTAATGACAACGTGCCACAGTTTCCACAATCATTTTATACCATACAAGTGatagaaaataatccaccaGGAGCTTTACTGAGCTCCCTCACTCGCACACGACCCAGATCTCCATGAAAATCAATATCTCGTTTATTTTATAATAGAAAAGGAAATAGCAAACACCTCCATGTCCATGCTCTTCTCCATTAATCCAGAGAACGGTAACCTTTACGCATTAAAGACATTTGATTATGA

Function

NR:

description
PREDICTED: protocadherin beta-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307267.1 True 1837 mRNA 0.40 1 10558330 10560166

Neighbor

gene id symbol gene type direction distance location
pcdhb LOC108275060,LOC108430951,LOC107754491,LOC107747094,LOC107596358 coding upstream 504 10555300 ~ 10557826 (+)
fgf18a fgf18a,LOC108274431,LOC103029481,LOC108430953,LOC105893086,LOC107747128,LOC107660900 coding upstream 32420 10508813 ~ 10525910 (+)
fbxw11a fbxw11a,fbxw11,LOC108275024,LOC108430955,LOC105893085,LOC107655672,LOC107588312,LOC107660901,LOC107754486,LOC107747095 coding upstream 87051 10452347 ~ 10471279 (+)
etf1a etf1,LOC108275025,LOC108430956 coding upstream 110118 10434947 ~ 10448212 (+)
bicc2 LOC108274692 coding upstream 539397 9997288 ~ 10018933 (+)
LOC117598040 LOC107596395,LOC107660898,LOC108275059,LOC106596699 coding downstream 1897 10562063 ~ 10567099 (+)
LOC117598002 LOC108275059,LOC107660898 coding downstream 7387 10567553 ~ 10573096 (+)
LOC117598003 LOC108275059,LOC107754490,LOC107660898 coding downstream 13453 10573619 ~ 10576056 (+)
LOC117598041 LOC108274579,LOC108430928 coding downstream 37012 10597178 ~ 10599659 (+)
LOC113529867 LOC108274577 coding downstream 40309 10600475 ~ 10607529 (+)
G146168 NA non-coding upstream 31472 10526543 ~ 10526858 (+)
G146141 NA non-coding upstream 107307 10450676 ~ 10451023 (+)
G145966 NA non-coding upstream 346835 10208004 ~ 10211495 (+)
LOC113530164 NA non-coding upstream 368137 10170715 ~ 10190193 (+)
G145950 NA non-coding upstream 454142 10103985 ~ 10104188 (+)
LOC113529600 NA non-coding downstream 195743 10755909 ~ 10758807 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding downstream 335575 10895741 ~ 10896384 (+)
G146308 NA non-coding downstream 455929 11016095 ~ 11017354 (+)
G146377 NA non-coding downstream 491050 11051216 ~ 11051420 (+)
G146380 NA non-coding downstream 493001 11053167 ~ 11053425 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 10401 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 1716064 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3091778 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3601814 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 3605457 6952802 ~ 6952873 (+)
hrh2a LOC108274475 other downstream 734962 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 1035333 11595499 ~ 11597970 (+)
G147542 NA other downstream 2356753 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2789157 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2812706 13372872 ~ 13389196 (+)

Expression


Co-expression Network