incenp (incenp,LOC107701072)


Basic Information

Item Value
gene id incenp
gene name incenp,LOC107701072
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19204494 ~ 19216347 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307367.1
TTTTAAACTACTTAAACCGTTTTGAGCGGGTGGCTCGAAAAGACGACTTCATACATCTGAGAGGAATTGCTATTGTTTTTGTAGCGCAGTCGGATTtgaatgtttatgataaaaggAGACACGGCGCCAGAAGAAGACGTCAAGTGAACTGTTAGgcatataattattttttaacaaaagGGACGCAGCCATGAGTTCCCTGCCGGAGGCCACGCGCTCCCTCGTGCAGGTGTTCAACGGGAAGCTGCAGGAGTTCACCAGTGAGATTGAGAACATTCACATGGTATGGCTGGAGGAGATTCAGCAGGAGGCTAAGCGCATGTTCTCCAGTGACTTTAGCACAGAGCCAGAGCTTATGCCAAAGACTCCATCACAGAAAAAGACAAACCGCAGGAAACGGGTGTCCACAGAGCTCAGTGAAGCTCGTAGCAAAAGACGtttctctAAAGGGAAGCGCAGTAACCTGCGACGTTCCTCAGTCCAGCTCACTCTAAATTCAATCTCTGAGTTGGTGACTGCACATGCCCCCAGTAACAGTACTGACAGTGTGGCTGAGGAGCCTGCTCGCCGCACACGCCGTAATAAAGCCACCGCAGCTGCAGACAGCGAGCCGGTCAAACGTAGCACGCGCAACAAAGCGGCTGCCAAGGCAAAGGAGCAGTTGGAGGAGGAGCTGGAAGCTGCTCCACAGTCACCTGCGAATGTTTCCAAGGAAAAGGAGCACAAGGTGGAGGAGTCAAGCAGCTCTTCATCTCCTGTGCAGACACTGGTGTCTGAGGCCGTGGTGAAAATCCCCTCGGTTGAGCGTCTTTCTGCTGAAAAGCTGCTCCAGTGCTCTTCCTCTCCAGGCCGCTCTGCACAGAAGATTACCATCGCAGCTGCAGGTGGCCAGGCGTCGACGCGGAGCGCCTCGGCCAGACACTCCCTGGTGGTGCGGCGCTCGCTGGCAGGCCTCAGGCACAGCATGACTCAGGAAGCAGTGCGCCGTGCTTCTCGACGCTCGTTTCTGAAGAAGAAGGCCAGGCTGGGCAACTCGACATGCAGCAGCACCGTCAGTGGGGATGTGTCTGTGGATGTAGAACCAGAGGAAAATGAGGAAGTGGTGGAGGAAAGGATGGAGGAGGTGGTTACTGAGGAAGAGCCAGCAGCAGAATCTAATGCTGAAACAGAGCCAACCCAGCCTGAGgtgtttaATCAGGAGTCTGAGCCCATGAAGCCAGTAGAGGAAGATGTTCCCATACTAGTGGAGGAAGAGATGATAGCATCTCCCAGTGTCCAGGAAAACTCCCGCTTCACACGCTCCATGGCTCGGCCCTTAGGATCAGATGACAGTGGGAAAAACGCTCAGGATGAAGTTCGtgcCTCTCGCACAGCCTCCAAACGTGCAGCTGCAGAAGCAGCGGCAGAAGCACTCAGCACCCCCAAGAAGAAGCACTCTCCTCCTAAGAAGTGCATGACAGGCATCACACCTGGCATGCGCTCCTTCCTGCACACGGTGCAGAAGAACCAGCTGCTGATGATGACTCCAAGCTCTCTTGGTCGTACCTCTGTCATGAAATCCTTTATTAAACAGAGCGGAAAACTTGAAATCAAGGAGCGGGAGCGGCAGAAATGGGATGCTCTTAACAAGAAGATTGaacaagaaaatgaaagaaagaaaaaaatggaggaggagagaaggaagAAACAGGAAGAAATGATAAAAGTATGAAAGAAACGGGACGAGCGTTTGAAACGAGTAGTGGAGGCCCGGGtgaaaggagaaaaggagaaagagcaggaaaagaaaaagaaaatagaagagAAAATGGCACAAATAGAGAAGAAAAATGACATGCTGCGTGTGGAGCGGATTGCTGAggagaaagcaaagaaaaaagtggCAAGTAAGCGTCAAGAGGAATTGGAACTTCgcaggaaacaggaagaagCAGCACGGAAGAAAAAGCTTCAGCAAGCTgaggaggaggagaggcgACACCAGGAGCTACTGGCCAAACGTAAGGCCGAGGAGGAGCGTGAGAAGGCACGCAAACAAGCCGAGGCTGCTCGTGCTCTGGAGCTCAAGAAGGAGCAAGAGAGGGAGCGTGAACGAGAGCGTGAGAGGCAACgtgaggagagggagagggaacgACAGGCTGCTGCTGAGAGGGAGCGGTTGGAGCGCGAGAGAGTAGAGCGGGAGAAGGCCTTAGCTCTTCAGAAGGAACTGGAGAGAGCGGccaaggagaaagagaggagggagctagaggagaagaggaggaaggaagaggagcagaaaaGGGCTGAGGAGGAGAGAATGGCCCAACAGAAacgtgctgctgctgctgccgctgCACCCCCTTCAACCACTACTGTTGTAAACCTGCCTGTCAGCAAAGCTCTTAACACCACAATTACACACAGTCCTGCACTAAACGTTACTGTAGATATTGAGCATTCAGCCATGAAAACTCCTGTAGGCAAAGGGACAGCTCATAACAAGACAATTGATAAGGGATCAGGGCTGAATGTTACTGTAGATGTAGAGCAGTCTCCTCAGTCCTACCAGATTACACCTAAAGGCAAGAAGGTTGAGGTTTTGGTCAATCCAGAGGACTACGGCATGGACCAGAACAGTGATGACTCAACAGATGATGAGTCAGCACCCAGGAAACCCATCCCTTCTTGGGCTGAGGGCATGCAGCTTCAGCAGGCTATTATGAAGCAATATTATGACCCACTAGATCTGCACTCGTACTTTGGGGAAGTTGAGCAGCCCAAACTGGAGAAGATTTTCCAAAGGAGCAAACCACGCTTCTTCAAGCGCACAAGCTCTGCTGTCTGGCACTCCCCTCCCCGCATGGGTGCCATGCCCAACTAGCTGCGAACTGTCTGTCTTGTctatttttctgcctttttttatATGTAAGCATTTTAGatttgtgtttatataaaacatttggaTTTCACTTAAATAAAGTGCTATAAAAATGTATCAGAAGTAGAGTAATAAAAGATCACAAAAGGGTTTTGCAACAAAATGCTGTGCACACCCCCcacccctcttttttttttcttccacttttattttaacCTACAGTATTTCTTAATACTGTTAGTACTGTTAGTAACGGAGGTCTTCGTACATTCGTTATGAAATGGCATGGCCACTTTGGGATACTTATGGGTTACAGAAatcactgtgtatgtatgtaaattcCTTGGTTAAACCTGCATaatcttaatgtttttttttttaatgttgagaAATGAAACAATTTAATTGA

Function

symbol description
incenp Predicted to act upstream of or within mitotic sister chromatid segregation and regulation of mitotic cytokinesis. Predicted to be located in cytoplasm; cytoskeleton; and nucleus. Is expressed in neural plate; proliferative region; and segmental plate. Orthologous to human INCENP (inner centromere protein).

NR:

description
inner centromere protein A-like

GO: NA

KEGG:

id description
K11515 INCENP; inner centromere protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307367.1 True 3269 mRNA 0.49 20 19204494 19216347

Neighbor

gene id symbol gene type direction distance location
ccdc77 ccdc77,LOC107754361 coding upstream 29390 19167269 ~ 19175104 (+)
LOC113529841 LOC108274949,LOC108428426 coding upstream 42346 19154291 ~ 19162148 (+)
zgc:153293 LOC108274949 coding upstream 50376 19149067 ~ 19154118 (+)
slc7a10b slc7a10,slc7a10b,LOC108274532,LOC108428368,LOC107679961,LOC107555706,LOC107752484,LOC105900738 coding upstream 63554 19126879 ~ 19140940 (+)
LOC117598072 NA coding upstream 126626 19076595 ~ 19077868 (+)
prnprs3 NA coding downstream 5582 19221929 ~ 19226416 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding downstream 21325 19237672 ~ 19240638 (+)
thoc5 thoc5 coding downstream 53347 19269694 ~ 19280582 (+)
chid1 chid1,LOC107674841 coding downstream 69438 19285785 ~ 19292110 (+)
mov10l1 mov10l1 coding downstream 215079 19431426 ~ 19446347 (+)
G151134 NA non-coding upstream 93521 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 206562 18955049 ~ 18997932 (+)
G151093 NA non-coding upstream 258552 18945275 ~ 18945942 (+)
LOC113530068 NA non-coding upstream 583673 18601539 ~ 18620821 (+)
G150958 NA non-coding upstream 652357 18551893 ~ 18552137 (+)
G151395 NA non-coding downstream 10302 19226649 ~ 19227893 (+)
G151417 NA non-coding downstream 101639 19317986 ~ 19393161 (+)
G151419 NA non-coding downstream 177527 19393874 ~ 19397489 (+)
G151421 NA non-coding downstream 181931 19398278 ~ 19400388 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 186962 19403309 ~ 19403657 (+)
faap24 faap24 other upstream 79293 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 408235 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 479808 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 521066 18675010 ~ 18683428 (+)
tmem17 tmem17,znf774,LOC107678976 other upstream 1020461 18182554 ~ 18184033 (+)
G151401 NA other downstream 44277 19260624 ~ 19263893 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 106984 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 445496 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2836267 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2860502 22076849 ~ 22078496 (+)

Expression


Co-expression Network