syngap1a (syngap1a,LOC108275193,LOC108439800)


Basic Information

Item Value
gene id syngap1a
gene name syngap1a,LOC108275193,LOC108439800
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6120616 ~ 6247705 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307383.1
ctctctctctctgtgccccctctctctctccctctgtctctctctctctctctctctctccttcactttaCTGCTCGCGCGCATCgcaattatactacatttagTAGTTGGGCATCTTCCCCCACTCCTCCGCCGACAGTATGGATTAAACTGAGGTGTATTTGGTCGCCATAGCTTAGCCACTCCGCGGACATGGGCATCTCTACCGGCCGCCTACATCCTCACACGGCGAGCCGCTGTGGCTTCTTCTAGCCCGGATGAGGCTGGTTACAAAGTACCGTCAGATTAGCCGGTGAGGCGGGTGCGCGCGTTCGATGCCGTTGGATCATGTCCTATGTGTCTTCACAAGATGGAAGGTGTGTGTCTCCGTGTTCCCGGCCTCACACTCCTCTGAATGGCCACGCCCACGACTCCCCCGGCTGGAGCCGCCCGCTCCGCGTCCGAGACGGAGACCAGTTCTACATGCTGGACCAAGAAGAGGTTCATCCTCTTCTTATGAGCGAACGGCGCCCTGTGTCTCACCGCACCAAGCTGCTCCGCAGGACCGTCTCCGTACCTGCCGATAGCAGACCCCACCCCGAATCAGAGCACGCTCGTGCTCGCAGAAAGAGCTTTGCCACAGTGAGGCAGAGAAGCATGGAAACTCCGCCCACTGCCCCTCCCCAGCAATTTCGTCAGTCGagTTTTCTTAGCCGCCGTCTGAAAAGCTCAATTAAGCGAGCCAAGAGCCAGCCCAAACTTGATCGCACCGGAAGCTTCCGCCACATGATTCTCCCACGATTCCGCAGTGCTGACCAGGAAAGAACACGTCTGATGCAGAGCTTCAAGGAGTCTCATTCCCACGAGTCTTTGCTGTCGCCAAGCAGCGCGGCCGAGGCGCTGGACCTCACGCTGGACGAGGATGCCATCATCAAGCCCGTCCACTCCAGCATCCTCGGCCAGGAGTACTGCTTTgagGTAACAACAGCCTCAGGCACAAAGTGTTTTGCCTGTCGATCGGCTGCTGAGCGGGACAAGTGGATCGAGAACCTGCAGCGAGCCGTTAAACCCAACAAGGATAACAGTCGTCGGGTGGACAATGTTCTTAAATTGTGGATTATCGAGGCGCGGGATCTTCCACCTAAAAAGCGCTACTACTGCGAGTTGTGTCTGGATGACATGCTGTACGCGCGCACCACCAGCAAGCCTCGAACAGACACAGTGTTCTGGGGTGAGCACTTTGAGTTCAACAACCTCCCTGCTATCCGGAGCCTGCGCCTGCACCTCTACAAGGAGACAGACAAGAAGCGACGCAAGGAGAAAAGCACATATCTTGGCTTGGTCAGCATTCCCATCTCGAGCATCACAGGCCGTCAGTTTGTGGAGCAATGGTACCCAGTCATCCAGCCCAGTGTCCTTGCAAAGGGTGGTGGTGTGGGCAGTGGAAAGGTCATTAATGCCTCACTGAGGCTCAAATCACGCTACCAGACTATGAGTATCCTGCCCATGGAGCTGTATAAGGAGTTTGCAGAGTATGTGACGAATAATTACCGCACTCTGTGTGCTGTTCTGGAGCCACTCTTGAGTGTGAAGAGCAAGGAGGAAGTGGCCTGTGCCCTGGTGCACATTCTACAGAGCACCGGCAAGGCCAAGGATTTTCTCTCGGACATGGCGTTGAGTGAGGTGGATCGTTTCATAGATAGAGAGCATCTGATCTTCAGGGAGAACACACTGGCGACCAAAGCCATAGAGGAGTACCTCAAACTTGTTGGACATCGCTACCTTAAAGACACCATTGgtgagttTATTCGTGCACTGTATGAGTCAGAGGAAAACTGTGAGGTGGACCCCATGCGAACCCCACCTTCCATGCTCCCAGACCACCAGGCTAACCTACGCATGTGCTGTGAACTTGCACTCTGCAAGATCATCAACTCCCATTGTGTTTTCCCCCGGGAACTTAAGGAAGTATTTGCATCGTGGCGTGTTCGTTGTGCTGAAAGAGGTCGTGAGGACATTGCAGATCGGCTCATCAGTTCCTCACTGTTCCTGCGCTTCCTGTGCCCAGCCATCATGTCTCCATCACTGTTTAACCTGACGCAGGAGTACCCATCTGAGCGCACATCCCGAACCCTCACGCTCATCGCCAAGGTGGTGCAGAGCCTGGCCAGCTTCTCCAAGTTTAGTGGTAAAGAGGATCATATGATGTTTATGAATGAGTTCCTGGAGATGGAGTGGGGATCCATGCAGCAGTTCCTCTATGAGATCAGTAATGTGGACTGTGGTAGTAACGCGGGGGCGTTTGAGGGTTACATCGACCTCGGCCGAGAGCTCTCTATCCTGCACAGCCTGCTCTGGGAAGTCATGGCCCAACTGAGCAAGGATGCTATCTTGAAGCTAGGGCCCTTGCCACGTTTGCTGAACGACATCAGCGTCGCTCTGAGGAACCCACAGCTGCACCGGCAGGCGAGTCACCAGCCACCCGAACGACACCTCGCACGCCCGCCCTACAGCCGCCCAGCCACTAATGACTTCCAGAGCCTGATGATGAGGGAGCAGAACAGtTCTATAGATATCTCTCGTCTACCATCTCCTACCTCCGGAGGCGGAGCTCTCTCTCACCCGGGCATGGCTGGCTTCGACAGAGATCACCGTGGCAACAAAGATGTGTTCTATGTGGCACGCCCACCCTTAGCCCGCTCAAGCCCCGCCTACTgcaccagcagctctgacatcaCTGAGCCAGACCCtaagGTGCTGAGTGTGAATAAGAGTGTATCTATGATGGACCTGCAGGACTCTCGCATCAACAGCATTTCCAACCTGCACTCTGTAAACGACATGCTGAACTCGTCACAGGGCTCCATCGCTGGACTGGGCAGTTTCGGTGGCGCTCCTCTGCGGCTCGGGGGCATGAGGTTCAGCCATTCGGGCGGCTTGGCCTCGGACTCGCTctcccagcagcagcagcatgcgGCAGCTGCCATGCACGTGCCGCTCTCCTTCCAGAACCCGCTGTTCCACTTGGCTTCGGATGGGCCTCAGTACCAGGCCCACCCCATGCCTCACACGCCCCACCGCTTCCTGCTCGCCCCGGAGCCTGAGAACGGGCACGCAGGCTTCGGTGTGCCAGCCTTCGGCCATGGTGGGTTCTCTCGCAGTGAGGATCTCTCAGCCCTGCGCACGCAGAACAGCCTGGTGCAGCCCAGCATTGTCCACTCGCACAGCTACAGTGACGACTACACCCGCCACAACCAGGCTGACTACGCACGCCGGCAGCTATCACTGCAGGTGCAGgAGAATCTCCATCAGCAGGTATTAATGGGCATGGCCCCTCAGACTGCTACCGGCACCGGAACACCCGCCTCAGTTGCAACGCCCCCAGCCACCATGCACCCTGTCCGTCAGGCTTCTATGGCTCCTCCCCCTACACAGCGTATTAAGCCTCAGCCTTCCCACCAGCTGTCAGTCAGCTCAGCTGCTAACTCCACCCCACCCAAGGTCCGACCCCAGAGCGGAAACCTCCTTCAGTCACCTGAGTCGAGTTTTGGAGCAAGGCCGTTGCCACGGCAGCAGCTGTCAGTTAAGGACAGCCCCGCCCCTGGTCTCCCTCACCAGTCCAGCACAGCCAGTGATAGCCAGCCACCACAGGGGGGTGCTAATGAGAACACAGAGAATGCACAGAGTGATACTCCTGCTAAAACTGCTCCACAATCCAACCAACAGCACCTACTAAAACCAACTACTAACAAGCAGGGCTCTAAGTCTCCCTCCACACTGAACCCTCCGACCCCTGCATCCGAGCGGACAGTCGCCTGGGTGTCCAACATGCCGCACCTGTCAGCTGACATCGAGAGTCTGCGTGTGGACAGAGAGGACCTGAAACTGAAGGAGCACTCTAAGAGCATGGATGAGTCTCGGCTGGACCGGgtgCGTGAGTATGAGGAGGAGATCCACTCCCTGAAGGAGCGGCTGATGATGTCCCACCGTAAGCTGGAGGAGTATGAACGCAGGCTGCACTCCCAAGAGCAGCAGACCAACAAGATCCTGCTGCAGTACCAGAGCCGTCTGGACGACAGCGAGAGGAGACTGAGGCAGCAGCAGCTGGAGAAAGACTCGCAGATCAAAGGCATCATCAGCAGGCTGATGGCGGTGGAGGATGAGTTGAGAGGCAGTGGCGTTTCTGACCTCAAATCCCGAATATTTACAGGAGAGGATGATCCATATTCCTCTCTGGGTTCGGTTGAGCAAAGCATGGTTCCAGGAGGGGAGGGGGTTCTTCCGCTGAACCCCATCTCGGCTCTCTCCTCCACAACCAGCTCCCCTTGGAATGGAGCTCTCCCTCCCCTGCCCCCACACCTGCACATCAGCCAGAACGGTGATCTACGTGGCAATACCGGCTTCCCCGGCGCAGCCATCGCTACAGCAGCTGGGGCCGCAGCCTGCTGGGCCACGCAGGGAGGGAGGCTGGGCTAGTCATGTGGCCTTTGAACACTGGGAGAGCTTTGTGCTGTGCAAATACATGCGCATTGTTGCTAGCAAAAATATTGAGTCTTCACATCCCAGCATGAGTCTGTGGCTGAAGAATCTGTAGTCAGCTTAACAGccatctgtccatttttttcGCTTTTATCTGTCCATTAAAGGGAACATCAGCCAAAATtgctaatgaaatgaaaatcaaCTGAATTTTAGCAATTTTAGCTGAGCTTTCTTTGAGTTTCTTAGCAAGGAAAGTCCCTCTTTAGATAGGGGgctgtgtaatagtgtgtgagGATTAGGTTCTGTCAGAGCTCTATTGTTCTCTTAAGCTGCGATTAATGTGCTATTGGCTTAAGCATTTGGTAtatagacatgtttttttttaaatatataaacatttagcCTATTGTTAGTTTATTTGAAAGTTTCTAAAATCTTAAGCAGAATGACTCATAATTGGCTATAAATGCCTAAAGCATATATTAATGAGACACTATTTTTAATGTCACAAGGGCTGTGAAAACAAAAGTGTGAAGATGTGTTTACATTTCCATGAATCAAAGAACTAATTTCTATATCTATGACTTGTAGATTTGCTGTTAGTGGTTCTAGTAGAGAGATTTTCAAGAGGTGGATATTTTTCCATGAGAATTAGTGGTGTACTTCAACAGCTGAGATATGAGTCATttcgtttttctttttaactatCAATCTGAatcgtttgtgtgtgtctttatgtgACTGCCATCTATCACTCATACCATTCCCATGCCACTTGctactgtaaatgtgtgtagcTTATCTGAATGTGTTTTCATATGTGGatgatatattaattattataaactaAGGTGTGAATGCAATGACAGGGACTTTATAAATGCCAACCAAGATTCCTGGACAATTAACCTGTCAATCAAAGGCTAAGTGGACTCTCATTGGACACTAAGCCACCTGCTACCCTCCTGCGCtcactttgtctttctctcccttagCCGATCTATGGTGGGCACACCGGAACATGATTGGACCACAGCAGCGCGAAAGGATATGTGACTGGACCCACGCCAGTCCAGGAACCTctcttgtttctgattggttgagagaggagagagaaagaggaagagcctgagaaaaaagaacaacaaaaaaaaaacatcgctCTGACACGTCAAACCccaaaaagcacacaaaatcACATACACAAGAGCACATTCTTTATGTCTCTCtacttctttctctccctctcttttcctccctgAGCCAAAATAACGACAATCACCTCTTTTTTATGTAGTGGATTGACAAATTAGCTACTCGGTGCTGtttattctattatttattcGGCCATTATTACTTTAGGATCTTTGGTACAAATTAAAGTTACAAACAGAGGGACCTGATTCATGTATCCTCTTTTTTTGCCCATAGTACACCTCAGACTTTCTCTCTatgtctttccctctctcagcAGGCGTGTTTGTTGTATTCAGCATGATGGCTGTAGAGGGGCTGTGTtggtctttgtgtgtgtgtgcggttaTGGTGTGTATTACCAACTCCATAGCCCACAAGCCTCCAAGCTCTAATAATGACTCTTAATTTTTgttcttgtaattttttttttcctataatgaGCCTTTTCAATCTTTTTATGGAGGTGTGGTCTTTTCTGAGCCAATCAGATGTCGCCATACTGCTCAGAAAGCCCTTCCTGTGCCGCGCAGTGGGCGGCGCCTCTTCTCTGTGCCTAAAGAGCTCTATACAAAACAGGGGAAATGAAAAAAACTTCATCGACAGGAGCGCACAGGACACTCCAATTTTTCAAGCTGTGGAGTTTGAAAGAGTATGATGTTTGATTAATATTGTCTCTGTTTGGACTTTGCTGCTTTAAGGACTTTTAAGGATCAGCATCCCTTCATCATCTCATCCAGTCGATGGGACGGAAATGACACAAGCGAAGATACAGCgccaccgtgtgtgtgtgcgcgtctaAGAGCAGAAACAACCTGCTTTAGTGAGCAAGACCGTGTGTAACATCCGTCTGCACATGAACGATGGGACGTATTCTGCGTACAGGTGCTTCTGGGCATCGATGCAAATGGATTTGTCTTTTCCTTTGTGAgcgtgtgcatgcatgtgcGTGTGAACTAGAGAAATAGGGAATAGGAACGGGATCAGAAGGAGAACACCAAGGATGACCATGGTTTCATCAGCTAACGGCAGGGACCCGCCTTGAGAGGAAACTGCAGTAGAGACAAAAAATCTATATGATCTAGTATTTATAAAGTCTAGCTTTAGTATTTATAACTCTAGACCTATAGCCCATCTTTATTCTATTAGACTTTATTTAAGCACAAATATACCCATTACCAATGTACTATATTGTGGTAATGTATTATACTACTCTCCTAAAGCATGGagacacgcacatacacacacttatacacacactcacattgaTCATAGAAGGAAGTAGTAGCATCATACCTCATTCGGTCCTACTGTTATCTTCTTTCCATTAGGCGCACCGCATCTATCAATCCGACGCTTCTGTTCGGTTTTCCTCGCCGTTCGATTGGAGTTTTTCTGAGATCGGTAGCTGATTTCTTTCGCTTGTGAGCTTCAGTTGGATTTGATGTACATAAGAGCTGAGGATTCAAGACCTGTTGATTTctacagttttattcattttaccaagtcctattgtttttttctgattctTCCTTGATGTTCGATAGatgattacacacatatacaccatTAGTTGGTTTTGCTGGTAGGTTTTTAGTcacttgctttttatttattatgattcttcttcttcttattattatttttctgtggtGGTTGAAAGTATTGATAACTTATTATGTCTGCACTtcagatattatttatttttcaaaaaaaaaaaaaaaatctaatcgtGCCCCGTGCCTAACTGTTCTGGTTCTGAAACTTTGGTGAGAAAGTTAGATGGCTCTGCTTGTTCGCCGCCATGGATCAGaaccagtaataaatgaaatatgaagCAGAACCTTACAATACTCTAGTCACCTTTTGTGTATAAAAGTCCTCCTGAGAAAGATTGTGCTGGTGAAACGTTTTCTCCCATCGTGTAGCgctatatttgttttttagagTCATGAGATTTTGTATCTAATCTTCAGAATGAAATGCCCAGAGCGGGTCTACTCCTACCCTTAAACTTAGCCATAGACATGGACAAGCCATACACACCCTGTCCTTCTCACGGGCTTTAGGAGCGTaggaatgtatatatttctatcGAACCACAGAAACACGTACCGGCGAAGGAAAGGCTCAGTGTTTAACAATGTGGGACACCTCAGCATATGGAGAAATGTTGTGAATGTTAATATTGTTAAGAAGACAATTATTCTATTCAAATATGACTATTATTGTAATTATCATTGCTTTCATTTTCTTGATGATATGATTATTGATTGATCAgaaatttctttcattttgtgaaTATGAGTTTACTATTATTCCAGAAGTTTAAATAATTggacaaattaataaatagatatatGCTAacctttaa

Function

symbol description
syngap1a Predicted to enable GTPase activator activity. Predicted to act upstream of or within regulation of GTPase activity and signal transduction. Is expressed in forebrain and hindbrain. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 5. Orthologous to human SYNGAP1 (synaptic Ras GTPase activating protein 1).

NR:

description
PREDICTED: ras/Rap GTPase-activating protein SynGAP-like isoform X1

GO:

id name namespace
GO:0046580 negative regulation of Ras protein signal transduction biological_process
GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K17631 SYNGAP, RASA5; Ras/Rap GTPase-activating protein SynGAP

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307383.1 True 8029 mRNA 0.49 22 6120616 6247705

Neighbor

gene id symbol gene type direction distance location
scn1bb LOC108274487,LOC107669127 coding upstream 3079 6108863 ~ 6117537 (+)
lingo4a LOC108274662 coding upstream 34537 6077917 ~ 6086079 (+)
LOC113547147 LOC108274655 coding upstream 45371 6039728 ~ 6075245 (+)
LOC113547108 LOC108274551 coding upstream 82816 5998467 ~ 6037800 (+)
LOC113547149 LOC108274551,LOC108274655,LOC108266882,LOC108260750,LOC108266219 coding upstream 85997 6025796 ~ 6034619 (+)
ndufb9 ndufb9 coding downstream 50061 6297766 ~ 6302565 (+)
proza proza,LOC108275052,LOC108438900,LOC107576663 coding downstream 157041 6404746 ~ 6415386 (+)
LOC113547127 LOC108274605,LOC108435589 coding downstream 358116 6605821 ~ 6679326 (+)
LOC117598051 LOC108274605 coding downstream 431779 6679484 ~ 6680169 (+)
LOC113547131 LOC108274606,LOC108435620 coding downstream 445088 6692793 ~ 6733914 (+)
G143832 snrpg,LOC107671841,LOC107594056,LOC107598637 non-coding upstream 136238 5978102 ~ 5984378 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding upstream 184287 5932581 ~ 5936329 (+)
G143766 NA non-coding upstream 196864 5922811 ~ 5923752 (+)
G143757 NA non-coding upstream 207875 5910983 ~ 5912741 (+)
G143644 NA non-coding upstream 393029 5724880 ~ 5727587 (+)
G143987 NA non-coding downstream 108612 6356317 ~ 6357920 (+)
LOC113547099 NA non-coding downstream 174431 6422136 ~ 6428434 (+)
G144221 NA non-coding downstream 296667 6544372 ~ 6544916 (+)
G144256 NA non-coding downstream 380646 6628351 ~ 6684107 (+)
G144359 NA non-coding downstream 560266 6807971 ~ 6826908 (+)
gpx3 gpx3 other upstream 372672 5740907 ~ 5747944 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1611368 4484833 ~ 4509248 (+)
G142576 NA other upstream 2658445 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2724549 3384180 ~ 3396067 (+)
LOC117598057 NA other upstream 3427774 2687795 ~ 2692842 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 339506 6587211 ~ 6593605 (+)
G144353 NA other downstream 532284 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 535811 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 549267 6796972 ~ 6798904 (+)
trnaw-cca_10 NA other downstream 703367 6951072 ~ 6951422 (+)

Expression


Co-expression Network