LOC117598043 (LOC108274575,LOC101884096)


Basic Information

Item Value
gene id LOC117598043
gene name LOC108274575,LOC101884096
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10611897 ~ 10617253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307412.1
GAGGACAGAGCATTTGAGTCACTGCATCTTTcgaatatataaatagatactTTTTTAACCTAGAGTCTTCTATACAGATACGACCCTTACGATACAATAGCACGGATTCTGATAGCAGGGGCTTTGTTCGCAATTAAAATCAATTGAAGATCATCAGTCGGGATGAGCGGTGGTGAACAAAGGCGGAGATGGGAGTACTGCTGGATTTCAGTGCAACTCTTTTTGCTGCTGTGCTTCGCCAGGCAGATTTCGGCTCAGATAAGGTACTCTGTCATGGAGGAAGTAAAAGAGGGATCGTTTATAGGAAATATTGCAAGGGACTTGGGTCTTGATGTCAGTACTTTGGTGGAAAGACGCTTACGTATCGTTTCTGGCGCTCAAGAAATTCTATTTCAGGTAAACCAGAACAATGGCGTCTTGTATGTACATAAAAAAATCGACAGAGAGGAGGTATGTGACAGCAGCAATCCCTGTGTATTTAACCTCAAAATCGCAGTAGACAGACCACTGGAGGTTCATTATGTGGTAGTAGACATTACGGATATAAATGACAATGCGCCTAGATTTCCAGATAAGCAACAAAAAATAGAAATCGCAGAAAATGCATCACCGGGTGCGCGCTTTCAGCTACAACGTGCGCATGATCCAGATATTGATAGAAATTCAGTACTCTCTTATAAATTAAGCAAAAACGAATATTTTGATTTAGAAATAAGAGACAGGGATGACGAAAAGGTACCCTTCCTGGTTTTACAGAAAGCATTAGATAGAGAGCGTAAAGCTGAACACGAACTGACACTGACAGCAGTAGATGGTGGAAATCCGTCAAGATCTGGAACATTAAATGTCACCGTCACTGTTCTCGATAACAATGACAATCGTCCAGTCTTCAGTCAAGAGGTTTACACGGTACATTTACAGGAAAACGTTCCGATAGGTACTACTGTGTTAAGAGTAAACGCAACAGATCTAGACGAGGGTTCGAATGGAGAGATCGTATACTCTCTTGGTAGCAACTTAAACCGTAAAATTTATGATGTATTTGATCTGGATACAGTTTCCGGTGAAATACGAGTAAAAGGCGAAATAGATTTTGAAAACATTGATGTGTACAGATTAGATGTTTTGGCCTCTGATAAAGGCTCACCTCCGATGACTGTGGATTGCAGGGTCACTGTGAAAATTTTAGATGTGAATGATAACGCTCCTGAAATAGAAATTATGTCACTCTCTAACGTAGTGCCTGAAGATTCCAAACCCGGAACAGTTATTTCTTTAATCAGTATTTTAGACAGAGACTCTGGTGTAAACGGCAAAGTCGTATGTTCTCTGTCATCAAACATACCTTTTGAACTAAAACCTTCCTTACAAGAAAATATGTACTCTTTAATTACAAACGCACATTTAGACAGAGAAGAGATTTCCCATTACGACATTACTTTAACAGCCACAGACCTGGGCCAGCCTTCTCTAACTGCACAAAAGAGTTTGAATGTGCAAATATCAGATGTGAATGATAATAGTCCAGAGTTTTCTCATAATCCTATTGAACTATATCTAATGGAAAATAACATTCCCGGTGCTTCTATATTTTCTGTAACTGCATCAGACAAAGACACGAATGAAAATGCAGTAATCTCATACAGCATTCTTAGAGGAGATGGTGCAAAGAACAACTGGCCTACATTTCTAAGCATTAACTCTGAAACAGGAGTTATTCACGCGCTAAAGAGTTTTGATTATGAAGTAGCCAAAACGTTCCAGTTCCACGTGCTCGCTACAGATTGTGGAAGTCCGTCACTAAGCAGCAACGTGACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGTTCCAGTGATCTTATATCCAGTCAGCGCTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTCAACGCAGGACATTTGGTGACTAAAGTGAGAGCCTATGACGCGGATATAGGATACAACGGCTGGTTATTATTTTCAGTGCAGGAAGTGAGTGACCACAGTCTGTTTGGTTTGGACCGCTATACAGGACAGATAAGGACCCTTCGCTCCTTCACAGAAACAGATGAAGCTGAACATAAACTGATCATACTGGTCAAAGACAATGGAAACGTGTCACTTTCAGCAACAGCGACTGTGATTATTAAACTTGTTGAACCCAAAGAGGCTTTTGCAGCTTCTGatgttaaaaacactataaaagaagaggaagaaaacaacgttacattttatttgattattaccTTGGGTTcggtttcatttcttttcatcatcAGTATCATTGTGCTGATTGTAATGCAGTGCTCCAAATCTCCAGACTTTTCCTCCAAGTATTTACAAGATACAAATTACGACGGGACTCTGTGTCACAGCATCCAGTACAGATCCGGAGATAAACGCTACATGTTAGTTGGACCCAGAACGAGCATCGGTTCTACTCTAGTTCCAGGCAGTAATGGGAATACTCTAGTGATACAAGATCGCAGGAAGAGAGCTTCTATGGAGATAAGGTACTCTATTCCAGAGGAGGTAAAAGAGGGAACAGTTGTGGGAAACATTGCGAAGGATTTGGATCTGGATGTAAGTACATTGGTGGACAGACGCTTCCGTATCGTTTCTGGATCTAAGGACGGTTTTTTCCAAGTAAACCAGAACAATGGCGTCTTGCATGTTGATAAAAAAATCGACAGAGAGGAGGTATGTGACAGCAGCAATCCCTGTGTATTTAACCTCAAAATCGCAGTAGACAGACCACTGGAGATTCATTATGTGGTAGTAGACATTACGGATATAAATGACAATGCGCCTAGATTTCCAGATAAGCAACAAAGAGTAGAGATAGCGGAGAGCACAATACCGGGTGCGCGCTTTCAGCTCCAAAGTGCGCGCGATCCTGACATTGGCATACATTCTGTGCGCTCTTACAAATTAAGCAAAAACGAACATTTCGatttagaaataaaagacaGGGATGACGAAAAGGTACCCTTCCTGGTTTTACAGAAAGCATTAGATAGAGAGCGTAAAGCTGAACACGAACTGACATTGACAGCAGTAGATGGTGGAAATCCATCAAGATCTGGAACATTAAATGTCACCGTCACTGTTCTCGATAACAATGACAATCGTCCAGTCTTCAGTCAAGAGGTTTACACGGTACATTTACAGGAAAACGTTCCGATAGGTACTACTGTGTTAAGAGTAAACGCAACAGATCTAGACGAGGGTTCGAATGGAGAGATCGTATACTCTCTTGGTAGCAACTTAAACCGTAAAATTTATGATGTATTTGATCTGGATACAGTTTCCGGTGAAATACGAGTAAAAGGCGAAATAGATTTTGAAAACATTGATGTGCACAGATTAGATGTTTTGGCCTCTGATAAAGGATCACCTCCGATGACTGTCAATTGCAGGGTCACTGTGAAAATTTTAGATGTGAATGATAACGCTCCTGAAATAGAAGTTACATCACTCTCTAACGTAGTGCCTGAAGATTCCAAACCCGGAACAGTTATTTCTTTAATCAGTGTTTCAGACAAAGACTCTGGTGTAAACGGGAAAGTTATATGTTCTCTGTCATCAAACATACCTTTTGAACTAAAACCGTCTGTACAGGAAAATATGTACTCTTTAATTACAAACTCGTATTTAGACAGAGAAGAGATTTCCCATTACGACATTACTTTAACAGCCACAGACCTGGGCCAGCCTTCTCTAACTGCACAAAAGAGTTTGAATGTGCAAATATCAGATGTGAATGATAATAGTCCAGAGTTTTCTCATAATCCTATTGAACTATATCTAATGGAAAATAACATTCCCGGTGCTTCTATATTTTCTGTAACTGCATCAGACAAAGACACGAATGAAAATGCAGTAATCTCATACAGCATTCTTAGAGGAGATGGTGCAAAGAACAACTGGCCTACATTCCTAAGCATTAACTCTGAAACAGGAGTTATTCACGCGCTAAAGAGTTTTGATTATGAAGTAGCCAAAACGTTCCAGTTCCACGTGCTCGCTACAGATTGTGGAAGTCCGTCACTAAGCAGCAACGTGACAGTGAACGTGTTCATTCTGGATCAGAACGACAACGTTCCAGTGATCTTATATCCAGTCAGCTTAACGGTTCTGCTGAAGGTGTGGAGGAGATTCCCCGCAATGTCAACGCAGGACATTTGGTGA

Function

NR:

description
PREDICTED: protocadherin alpha-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307412.1 True 4206 mRNA 0.41 2 10611897 10617253

Neighbor

gene id symbol gene type direction distance location
LOC117598042 LOC108274576 coding upstream 2001 10607420 ~ 10609896 (+)
LOC113529867 LOC108274577 coding upstream 4368 10600475 ~ 10607529 (+)
LOC117598041 LOC108274579,LOC108430928 coding upstream 12238 10597178 ~ 10599659 (+)
LOC117598003 LOC108275059,LOC107754490,LOC107660898 coding upstream 35841 10573619 ~ 10576056 (+)
LOC117598002 LOC108275059,LOC107660898 coding upstream 38801 10567553 ~ 10573096 (+)
LOC117595700 LOC108430926 coding downstream 1217 10618470 ~ 10623013 (+)
LOC113529656 NA coding downstream 27679 10644932 ~ 10648979 (+)
LOC113529654 LOC108275110 coding downstream 59946 10677199 ~ 10679915 (+)
LOC117598100 LOC108275110 coding downstream 74126 10691379 ~ 10694084 (+)
LOC117598044 LOC108275110,LOC108275116,LOC108275111,LOC106611847 coding downstream 83304 10700557 ~ 10705461 (+)
G146168 NA non-coding upstream 85039 10526543 ~ 10526858 (+)
G146141 NA non-coding upstream 160874 10450676 ~ 10451023 (+)
G145966 NA non-coding upstream 400402 10208004 ~ 10211495 (+)
LOC113530164 NA non-coding upstream 421704 10170715 ~ 10190193 (+)
G145950 NA non-coding upstream 507709 10103985 ~ 10104188 (+)
LOC113529600 NA non-coding downstream 138656 10755909 ~ 10758807 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding downstream 278488 10895741 ~ 10896384 (+)
G146308 NA non-coding downstream 398842 11016095 ~ 11017354 (+)
G146377 NA non-coding downstream 433963 11051216 ~ 11051420 (+)
G146380 NA non-coding downstream 435914 11053167 ~ 11053425 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 16296 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 63968 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 1769631 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3145345 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3655381 6956445 ~ 6956516 (+)
hrh2a LOC108274475 other downstream 677875 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 978246 11595499 ~ 11597970 (+)
G147542 NA other downstream 2299666 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2732070 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2755619 13372872 ~ 13389196 (+)

Expression


Co-expression Network