LOC117598063


Basic Information

Item Value
gene id LOC117598063
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2669127 ~ 2676154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307464.1
TATGCAAGGTGTGATGTAAGTGGTTATAACTTGAATCAACCTTACAGTAGGCTACAGGACCTTTTTTCACATCCTCATAATTAAATCTCATGTCATAATGGCGAAGTTTAAGCACATTTGGCAAACCTGACTCTCATATTATAATCTCTCTATATACTTGGCAGTATTTTCCACTGAGTATGCTGCctacagaaaagagaaaaacccCTACAGACACTGTTCTccacccctacacacactgttctcCATCCCTACAGACACTGTTCTCCATccctacacacactgttctcCATCCCTACAGACACTGTTCTCCATccctacacacactgttctcCACCCCTACACATGCAGCAGTCTAGAAGGAAGAAACGAAACGAAAAGAATCGACTTCTTTGTGTTAGATTTGACTTCTCTAGACTTCTAGTTTATGAATAATGTGCTACAATGGAAAGTGAAAATACTCTTTATCTCACCACGAGGAATAATCACCTACTAAGCAGATAAGATAGTATAGTATATCTTGTACATCTAGAGAAGGAAGAACTGACACCCAGCCagagctcctcctcctccatctgtcTGTAAACGCTTGCTTTTTGCAGTTCAAGCATTTCTGGACGAGCTCTACATCGGGTGACTGaagAAAATGTCCACACACTCCTCCAGACAGTATCAGGGCATCATGACCTCCTTTTTTCCCATTTGCATCGTATTGGGCTCCATGTGTGTGAGCCTCCTCTCTGCAGAAGCTGAGATCACTGTATCTGGCCAAGTGGGGTCTACAGCTGTCCTGCCGTGTAAACTGCAGAGTGTAGGCACTGAAACACCGCATATTAGGTGGCTCACTGAATCTGAGATTGTGTTTGAGCGTGTTTTGGGTGAGGAGAGCTATCAGGCTGAGGGATATGAGGACCGTGTGGACGTCCCTGAGGAAGAGCTGCGTAAGGGAAACTGTTCCTTAGTGTTGCAGAATCTATCACTTACTGATGCAGGTGTCTACACGAGCTACCAGATAGTGAAACGCACCAAGAGATCTACCTCTGTcaagacaaaaacagaagagaTCAACCGTATTAATCTCTCAGTCCAGGAAAAACCTCCTGAAAAGAGAACTGAAATTCCCACAGaagaaacagaaaaaacttATGAAAAGAGAACTGAAATTCCCACAGaTGATGCAGGAATGAAGTGTCCTCACCCACCGATCATGGTCTTGTCCCTCATATCATGTTTACTCCTCCAGTTCTTCTTTGCATAAACCTGAGTGTGAATTAGAGCTGTGCACAGGACTGTGTCTTTATGCCTCCAGCACCACGTGGTGGAagtgttatgtttttgtgttgttctgtTCGCCTGCTTGAATACACAACCTcctgtcagtctgtgtgttaccTGTCAGAAGGTCAGAGCCAAAGCATATAGGGAGGGTCAGACAAAGCATCAATCCTAATGACCCCCATAAAGGgtacaggaaagagagaaaagaaatgtacCCTGTCCACTTTAGGGTTACGGGAACCCAGCCCTGGAGCCAGGCCACAGGCAAGCGTCTGGTGACTGGGCCCCCCACATAACCCAGTCGCGCTCATCCTGAAATGCTGATGTGGAGCCATTATGTGGGCTTAAGACCTTCAGAATGAAAGGTGGGAGTCaatcagaaaacttagttagttttacctctgacttacAACTCtgactggagattccttccataaatattaagaaGTTGTTCATATATAAGCAacagattaatataaaatggTGATTTGCAGCTGAACTACTTTTATATCATCAATTAGATTCCAGAATTTAACAACACAGAAGagatataaaagattaaaatagcaAGACACAGCAAAAATTAACATCAGCTGTTTTTAAGTAGGTAACTAGttaacatatataaaataaaaactgtagtTTACAACCCTCACTGTAGACAAACGTGCATGTAGTAGCACTTGTAAACTTTCAAAGTGTTAGCcagtagaaaaaaatagaaaatagggTAGGCTGTGATCTCTTCTTAAGAAATAACAGAAGAAGTGATTATTGGGAAGTGAAACTCATTTCTGGCcaatgtgtaaaaacatttaatgcttgtgacttttttgttggaTGCCACTGGATCCCAGTCGTGATGCACAGCTCTAATGTGACTTGTTTATTGTGACCTGTGGGAACAGTAGGATGCCATTTCAGACATGGAAAAAGTGTACATAGCTAAGGCCAAATCCCAAATAGCTTCCTACTCTTTACATAGCTGCACAACAATTAGtttaacacaaatatatttaGACCAGTTTTAAACATAACTCGAAGATATAAGAACGTATATTGAATCTATCTTCTGTACTGcttaataatttacatttttgttgcaGATGGTTTGATGATATTGCTTTTGGCAGTGCTGTCCAACAGCTACATAGACGCTTAATTTCATTAGCTTCATTACACAAGCTAACCTGTTAGAAGTTTTCCTACATCACAGTTGAAGTATTATTCTCAGGGTTTGCTGTTAAACTGCAATGACTGTAAGTGATATCCATGACTGTAAGTGTTATTGTTACTGATGCTGTATATAATCACTTTTGCTAATAAAGGCACTTTGCTGAACAATTTA
>XM_034307465.1
ATGTAAGTGGTTATAACTTGAATCAACCTTACAGTAGGCTACAGGACCTTTTTTCACATCCTCATAATTAAATCTCATGTCATAATGGCGAAGTTTAAGCACATTTGGCAAACCTGACTCTCATATTATAATCTCTCTATATACTTGGCAGTATTTTCCACTGAGTATGCTGCctacagaaaagagaaaaacccCTACAGACACTGTTCTccacccctacacacactgttctcCATCCCTACAGACACTGTTCTCCATccctacacacactgttctcCATCCCTACAGACACTGTTCTCCATccctacacacactgttctcCACCCCTACACATGCAGCAGTCTAGAAGGAAGAAACGAAACGAAAAGAATCGACTTCTTTGTGTTAGATTTGACTTCTCTAGACTTCTAGTTTATGAATAATGTGCTACAATGGAAAGTGAAAATACTCTTTATCTCACCACGAGGAATAATCACCTACTAAGCAGATAAGATAGTATAGTATATCTTGTACATCTAGAGAAGGAAGAACTGACACCCAGCCagagctcctcctcctccatctgtcTGTAAACGCTTGCTTTTTGCAGTTCAAGCATTTCTGGACGAGCTCTACATCGGGTGACTGaagAAAATGTCCACACACTCCTCCAGACAGTATCAGGGCATCATGACCTCCTTTTTTCCCATTTGCATCGTATTGGGCTCCATGTGTGTGAGCCTCCTCTCTGCAGAAGCTGAGATCACTGTATCTGGCCAAGTGGGGTCTACAGCTGTCCTGCCGTGTAAACTGCAGAGTGTAGGCACTGAAACACCGCATATTAGGTGGCTCACTGAATCTGAGATTGTGTTTGAGCGTGTTTTGGGTGAGGAGAGCTATCAGGCTGAGGGATATGAGGACCGTGTGGACGTCCCTGAGGAAGAGCTGCGTAAGGGAAACTGTTCCTTAGTGTTGCAGAATCTATCACTTACTGATGCAGGTGTCTACACGAGCTACCAGATAGTGAAACGCACCAAGAGATCTACCTCTGTcaagacaaaaacagaagagaTCAACCGTATTAATCTCTCAGTCCAGGAAAAACCTCCTGAAAAGAGAACTGAAATTCCCACAGaTGATGCAGGAATGAAGTGTCCTCACCCACCGATCATGGTCTTGTCCCTCATATCATGTTTACTCCTCCAGTTCTTCTTTGCATAAACCTGAGTGTGAATTAGAGCTGTGCACAGGACTGTGTCTTTATGCCTCCAGCACCACGTGGTGGAagtgttatgtttttgtgttgttctgtTCGCCTGCTTGAATACACAACCTcctgtcagtctgtgtgttaccTGTCAGAAGGTCAGAGCCAAAGCATATAGGGAGGGTCAGACAAAGCATCAATCCTAATGACCCCCATAAAGGgtacaggaaagagagaaaagaaatgtacCCTGTCCACTTTAGGGTTACGGGAACCCAGCCCTGGAGCCAGGCCACAGGCAAGCGTCTGGTGACTGGGCCCCCCACATAACCCAGTCGCGCTCATCCTGAAATGCTGATGTGGAGCCATTATGTGGGCTTAAGACCTTCAGAATGAAAGGTGGGAGTCaatcagaaaacttagttagttttacctctgacttacAACTCtgactggagattccttccataaatattaagaaGTTGTTCATATATAAGCAacagattaatataaaatggTGATTTGCAGCTGAACTACTTTTATATCATCAATTAGATTCCAGAATTTAACAACACAGAAGagatataaaagattaaaatagcaAGACACAGCAAAAATTAACATCAGCTGTTTTTAAGTAGGTAACTAGttaacatatataaaataaaaactgtagtTTACAACCCTCACTGTAGACAAACGTGCATGTAGTAGCACTTGTAAACTTTCAAAGTGTTAGCcagtagaaaaaaatagaaaatagggTAGGCTGTGATCTCTTCTTAAGAAATAACAGAAGAAGTGATTATTGGGAAGTGAAACTCATTTCTGGCcaatgtgtaaaaacatttaatgcttgtgacttttttgttggaTGCCACTGGATCCCAGTCGTGATGCACAGCTCTAATGTGACTTGTTTATTGTGACCTGTGGGAACAGTAGGATGCCATTTCAGACATGGAAAAAGTGTACATAGCTAAGGCCAAATCCCAAATAGCTTCCTACTCTTTACATAGCTGCACAACAATTAGtttaacacaaatatatttaGACCAGTTTTAAACATAACTCGAAGATATAAGAACGTATATTGAATCTATCTTCTGTACTGcttaataatttacatttttgttgcaGATGGTTTGATGATATTGCTTTTGGCAGTGCTGTCCAACAGCTACATAGACGCTTAATTTCATTAGCTTCATTACACAAGCTAACCTGTTAGAAGTTTTCCTACATCACAGTTGAAGTATTATTCTCAGGGTTTGCTGTTAAACTGCAATGACTGTAAGTGATATCCATGACTGTAAGTGTTATTGTTACTGATGCTGTATATAATCACTTTTGCTAATAAAGGCACTTTGCTGAACAATTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307464.1 True 2626 mRNA 0.41 6 2669127 2676154
XM_034307465.1 False 2568 mRNA 0.41 5 2669140 2676154

Neighbor

gene id symbol gene type direction distance location
LOC117598108 NA coding upstream 116750 2550305 ~ 2552377 (+)
LOC117598106 NA coding upstream 285334 2374699 ~ 2383793 (+)
LOC117598085 NA coding upstream 366365 2301366 ~ 2302762 (+)
LOC117598175 NA coding upstream 374611 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 391131 2276999 ~ 2277996 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 77275 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 217333 2893487 ~ 2898257 (+)
LOC113523850 NA coding downstream 379469 3055623 ~ 3061337 (+)
rps18 rps18,LOC107726165,LOC107693766 coding downstream 442134 3118288 ~ 3123714 (+)
slc39a7 slc39a7,LOC107395789 coding downstream 469884 3146038 ~ 3153846 (+)
LOC117598068 NA non-coding upstream 19215 2649433 ~ 2649912 (+)
G142436 NA non-coding upstream 28622 2433259 ~ 2640505 (+)
G142445 NA non-coding upstream 97580 2564492 ~ 2571547 (+)
G142443 NA non-coding upstream 113470 2541250 ~ 2555657 (+)
LOC117598111 NA non-coding upstream 171495 2487186 ~ 2497632 (+)
LOC117598070 NA non-coding downstream 81572 2757726 ~ 2762429 (+)
G142458 NA non-coding downstream 114445 2790599 ~ 2791137 (+)
G142469 NA non-coding downstream 180776 2856930 ~ 2993966 (+)
G142478 NA non-coding downstream 274913 2951067 ~ 2993474 (+)
G142502 NA non-coding downstream 427265 3103419 ~ 3104643 (+)
LOC117598105 NA other upstream 110400 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 191169 2475158 ~ 2477958 (+)
LOC117595676 LOC108274861 other upstream 311134 2335209 ~ 2357993 (+)
LOC117598173 NA other upstream 371421 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 377921 2288098 ~ 2291206 (+)
LOC117598057 NA other downstream 11641 2687795 ~ 2692842 (+)
LOC113523845 NA other downstream 708026 3384180 ~ 3396067 (+)
G142576 NA other downstream 721516 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1808679 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 3064753 5740907 ~ 5747944 (+)

Expression


Co-expression Network