LOC117598085


Basic Information

Item Value
gene id LOC117598085
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2301366 ~ 2302762 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307544.1
CGAAACTGCGGATTTATTCCCGAAGATTGAGACCGAAATTTTGTGCTATAACATGAACATGAGTGAAGGTGAGAGGAGGAGCGAAGGAGGAGCGAAGGAGAACTCTGACTCAGCGGGAACTCAGAAAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACACGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCAGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGCTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCAGCTCTATGGTGTGTTAGTACAGAAGAATTTTCTTGATCAGAGTATGATGTAATCCATCAGgtcaaaataatcaaatcaaagTGAAATTATCCATCAAAGCCCTAAGAATGACTTTGAAGTGCATTTTAAGATGGAGAGAGTGTCACTTTATGTTAAACCAGTGTTTCAGCATATTACTAATCGATTATATCACGCCACAGTTTAAACGAAGTTACAGAGACAAGGAAATAATTGTGGTGAGAGGTCAGGGacgtgattaaaagaaaaaatgagaaaactccacctaatgagatcattgttttagaattgtattcAAGCATGAGCCACACCaatgtaaatcagatgatctAGACATCTCAACTTTGTTGACTGCTTCAATAAAGTCTAATTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307544.1 True 944 mRNA 0.42 3 2301366 2302762

Neighbor

gene id symbol gene type direction distance location
LOC117598175 NA coding upstream 6850 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 23370 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 26603 2273591 ~ 2274763 (+)
LOC117598027 NA coding upstream 41892 2257540 ~ 2259474 (+)
LOC113545612 NA coding upstream 45530 2249486 ~ 2255836 (+)
LOC117598106 NA coding downstream 71937 2374699 ~ 2383793 (+)
LOC117598108 NA coding downstream 247543 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 366365 2669127 ~ 2676154 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 450667 2753429 ~ 2756267 (+)
LOC117598055 NA coding downstream 590725 2893487 ~ 2898257 (+)
LOC117598178 NA non-coding upstream 1311 2299176 ~ 2300055 (+)
G142391 NA non-coding upstream 15225 2280360 ~ 2286141 (+)
LOC113545551 NA non-coding upstream 74570 2220567 ~ 2226796 (+)
G142305 NA non-coding upstream 175970 2084785 ~ 2125396 (+)
G142302 NA non-coding upstream 197437 2054999 ~ 2103929 (+)
G142411 NA non-coding downstream 56037 2358799 ~ 2359457 (+)
G142429 NA non-coding downstream 69362 2372124 ~ 2372355 (+)
G142420 NA non-coding downstream 88582 2391344 ~ 2396251 (+)
G142433 NA non-coding downstream 99161 2401923 ~ 2671465 (+)
G142435 NA non-coding downstream 115192 2417954 ~ 2434347 (+)
LOC117598173 NA other upstream 3660 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 10160 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 21479 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 29780 2270050 ~ 2271586 (+)
LOC113545687 NA other upstream 118313 2069238 ~ 2183053 (+)
LOC117595676 LOC108274861 other downstream 32447 2335209 ~ 2357993 (+)
LOC117598105 NA other downstream 70461 2373223 ~ 2558727 (+)
LOC113523823 NA other downstream 128383 2431145 ~ 3032526 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other downstream 172396 2475158 ~ 2477958 (+)
LOC117598067 NA other downstream 257049 2559811 ~ 2808637 (+)

Expression


Co-expression Network