il21


Basic Information

Item Value
gene id il21
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 11490411 ~ 11492927 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307573.1
TGTAGCCAGTATGAACGCAACCGTTTAAACGCATCTTTAGCCTATTAGAGCTCGGATCAGTGTAAGTGAATAGTATAGATAAACATGAGGGCGACTTTCTcctgtgttctgtgtgttctgCTTGTAGCAGCATGCTGGGCTCAAATTAACTCTCATAAGGatatgaaaactgaaaaactgcTCCAACAAGCCATCACTCACCTCAGATCACTTATTCTCAAAGAAAAGGACAATGACATGTTTCTCCATTCACCAACAAATGACATCAAGgaGTGCTGCTCTCAGTCTGCTTTCGAGTGCTTCAGGAAAGAGCTTAACTCCACCATCCATAGGAATCTACTGAAGATGAAATTGGCCAGAAATCTGGGCAAGCCCACCATCATGAATAGCATGAGCACCTGCACTGAGGAAGAAATAAAGaaagtcCAGTGCATGTCCTGTGACTCCTACCCGATGGTCAGCAGCAAACAATTTCTGATTAATTTACAGTCCCGTCTGCAGAAGGCTTACAGTCGCCTTTCATAAAATACAAgtatgatgatgacgacgacgTGAATGTGTGGACGACACTACCTCATGAAACCCTGGTGTAAAGCACTCTGGATCAACCCATCTATTTATTGcctatttatttgtattttttctttttgtattacAATAGACTGAGAAATGCCCTAATATTTCTAGAATTTCTGAtatgttggcagtgtgtttagCAGTTTTCTTACTGCTAATTTAGATTAATACTGTGTTCACATTGCGGGtaaatgtattgtaatgtaCATATATACTGCAATGTATAGTATTAACAATTATAAACCAGTACAAGAGAGAAGACTCAGAACAAGACCTGCTGCTATAGCACCTCCTAATGTATGGGCAAACTAATTACAGTTTTGTACTTGCATGCTCACTTCTCCCAAGACAtcaaaaaaagtttgttttacaCTGTCAACTGAAGAATCTTCAAGACTGAGATAACCAATTATGT

Function

NR:

description
interleukin 21 precursor

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307573.1 True 991 mRNA 0.39 6 11490411 11492927

Neighbor

gene id symbol gene type direction distance location
cetn4 cetn1,LOC108438842,LOC103037928,LOC107596341 coding upstream 8634 11474421 ~ 11481777 (+)
zgc:152774 zgc:152774,LOC108274965,LOC107731348 coding upstream 49000 11420317 ~ 11441411 (+)
pmt LOC108275150,LOC108438819,LOC107552346,LOC107662165,LOC107731361 coding upstream 76910 11394178 ~ 11413501 (+)
LOC113529554 tlx3 coding upstream 154654 11324357 ~ 11335757 (+)
LOC113529553 fam196b coding upstream 262523 11198866 ~ 11227888 (+)
arsia LOC108275202,LOC108443929,LOC103039297,LOC107678625,LOC107552342,LOC107731357 coding downstream 79163 11572090 ~ 11577055 (+)
rpl26 rpl26l1,rl26,LOC103040128,LOC100708525,LOC105024418,LOC107697626 coding downstream 96114 11589041 ~ 11593788 (+)
LOC113529641 ncbp1 coding downstream 109520 11602447 ~ 11616644 (+)
LOC113529539 pcgf3,LOC107697629,LOC107751329,LOC107562381,LOC107587068 coding downstream 138695 11631622 ~ 11669599 (+)
smu1a smu1,LOC108275199,LOC106604632,LOC103353869,LOC108442464 coding downstream 379969 11872896 ~ 11880458 (+)
G146573 NA non-coding upstream 47164 11441530 ~ 11443247 (+)
G146576 NA non-coding upstream 73022 11417178 ~ 11417389 (+)
G146513 NA non-coding upstream 196928 11221581 ~ 11293483 (+)
G146380 NA non-coding upstream 436986 11053167 ~ 11053425 (+)
G146377 NA non-coding upstream 438991 11051216 ~ 11051420 (+)
G146645 il17b non-coding downstream 25395 11518322 ~ 11579432 (+)
G146687 NA non-coding downstream 177835 11670762 ~ 11674491 (+)
G146741 NA non-coding downstream 235099 11728026 ~ 11728681 (+)
G146765 NA non-coding downstream 308150 11801077 ~ 11830797 (+)
G146791 NA non-coding downstream 432941 11925868 ~ 11929820 (+)
hrh2a LOC108274475 other upstream 184093 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 894810 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 942482 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 2648145 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 4023859 7447870 ~ 7466552 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 102572 11595499 ~ 11597970 (+)
G147542 NA other downstream 1423992 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 1856396 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 1879945 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 2268407 13761334 ~ 13776871 (+)

Expression


Co-expression Network