chid1 (chid1,LOC107674841)


Basic Information

Item Value
gene id chid1
gene name chid1,LOC107674841
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19285785 ~ 19292110 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307580.1
GGATGAAGCCTCTCAGTCACTCTGCCTGTTTGACCAGCTAGTCAAGAGTTAAGTGCCCTTTATAGACTACCACTGACATGTTACATTGCTTACTCCGCACTGTTTTTCTGCAgaacaattaaataataatcatagcATATACGCATATAGCAGAGAAGAGCAGAGTGAAATGAGAGCTGTTCTGCTGTTTCTCTACATCTCTACATCAGTCCCTGTTATCAGAGGCACACTCTCAAAAACAGATGCCAAAAAACTCAACAAAGTGCAGGAGGCGGAGacaGCTATTGCGGAGCAGCCGGTGCAGGAGCGGGGTTTGATAGTGACCACTCCCCAGTGGAGGGATGtagtgagagaagagaagagatttTGCCCTCAGACCATATCAACACATCACTTCCAGGGAGCAGTGCTGGGTTACATCACACCGTGGAACTCCCATGGGTATGACATTGCTAAGGTTTTCGGGCCTAAGCTGACCTCTGTGTCTCCGGTATGGCTCCAGCTCAGACGCAAAGGACCAGAAAGCTTTGATATCACCGGCCTGCATGACCATGACCAGGGTTGGGTCAAGGCTGTGAGGAAagccaacaaaaaaaataaaatatTACCTCGGCTATTATTTGATGGCTGGTCTTATCAGGACTACGTGAGCGTCCTGGACAGTGAGGATGAGATTGAGGAGATTGGCAGAGAAATTGTTGAGGTGGCAAAGGCAGAAGGTTTTGATGGCTACACTCTGGAACTGTGGAGTCAGCTGGGAGGAAACAAGAGAAAGGAGCTGATCCACTTGGTTACACACCTGTGCAAGTACCTGAAGGCTGGAAAGCTTACGTGCATCCTTGTCATTCCTCCAGCTATCATCCCTGGGTCAAACCAACCAGGCATGTTTGGAAGGGAAGACTTTGAAAAACTGGCTCCTGTCGTTGATGCATTCAGCTTGATGACTTATGACTATTCCAGTCCGGGCAGACCAGGCCCTAGTTCTCCACTGCCCTGGATGCGAGATTGTGTGCTGCAGCTCGCACCACAGAGCCAGTGGAGATACAAGATCCTGCTGGGTCTCAACCTGTATGGCCTCGACTTCACTGTCAATGGGGGAGCTGAGCCCCTGCTGGGGGGCAGGTACATCGAGCTTCTGAAGGAAGTCAAACCAAAGCTTGTTTGGGATGAGTATGCAGCAGAACACTATTTTACTTACAAAAGAAGTTCAGTGAAGCATACTGTCTATTATCCAACTCTGAAGACTCTCGAACTACGAATTGCACTGGCAACAGAACTGGGTACAGGAATCTCTTTGTGGGAACTTGGACAAGGCTTGGACTATTTCTATGACCTTTTGTGAATTGGGCTGAGACAAACAAACCCACgtggacacacacaaaaaaatgtaattcctTCTTCCAAACACTGATGGGTTATGGTACATTGTTATTTATGACAATGCCACTATTGAGCATgccaataaaattatttttattatataaaaataaaaaggaaaaagcta
>XM_034307581.1
GGGATGAAGCCTCTCAGTCACTCTGCCTGTTTGACCAGCTAGTCAAGAGTTAAGTGCCCTTTATAGACTACCACTGACATGTTACATTGCTTACTCCGCACTGTTTTTCTGCAgaacaattaaataataatcatagcATATACGCATATAGAGAAGAGCAGAGTGAAATGAGAGCTGTTCTGCTGTTTCTCTACATCTCTACATCAGTCCCTGTTATCAGAGGCACACTCTCAAAAACAGATGCCAAAAAACTCAACAAAGTGCAGGAGGCGGAGacaGCTATTGCGGAGCAGCCGGTGCAGGAGCGGGGTTTGATAGTGACCACTCCCCAGTGGAGGGATGtagtgagagaagagaagagatttTGCCCTCAGACCATATCAACACATCACTTCCAGGGAGCAGTGCTGGGTTACATCACACCGTGGAACTCCCATGGGTATGACATTGCTAAGGTTTTCGGGCCTAAGCTGACCTCTGTGTCTCCGGTATGGCTCCAGCTCAGACGCAAAGGACCAGAAAGCTTTGATATCACCGGCCTGCATGACCATGACCAGGGTTGGGTCAAGGCTGTGAGGAAagccaacaaaaaaaataaaatatTACCTCGGCTATTATTTGATGGCTGGTCTTATCAGGACTACGTGAGCGTCCTGGACAGTGAGGATGAGATTGAGGAGATTGGCAGAGAAATTGTTGAGGTGGCAAAGGCAGAAGGTTTTGATGGCTACACTCTGGAACTGTGGAGTCAGCTGGGAGGAAACAAGAGAAAGGAGCTGATCCACTTGGTTACACACCTGTGCAAGTACCTGAAGGCTGGAAAGCTTACGTGCATCCTTGTCATTCCTCCAGCTATCATCCCTGGGTCAAACCAACCAGGCATGTTTGGAAGGGAAGACTTTGAAAAACTGGCTCCTGTCGTTGATGCATTCAGCTTGATGACTTATGACTATTCCAGTCCGGGCAGACCAGGCCCTAGTTCTCCACTGCCCTGGATGCGAGATTGTGTGCTGCAGCTCGCACCACAGAGCCAGTGGAGATACAAGATCCTGCTGGGTCTCAACCTGTATGGCCTCGACTTCACTGTCAATGGGGGAGCTGAGCCCCTGCTGGGGGGCAGGTACATCGAGCTTCTGAAGGAAGTCAAACCAAAGCTTGTTTGGGATGAGTATGCAGCAGAACACTATTTTACTTACAAAAGAAGTTCAGTGAAGCATACTGTCTATTATCCAACTCTGAAGACTCTCGAACTACGAATTGCACTGGCAACAGAACTGGGTACAGGAATCTCTTTGTGGGAACTTGGACAAGGCTTGGACTATTTCTATGACCTTTTGTGAATTGGGCTGAGACAAACAAACCCACgtggacacacacaaaaaaatgtaattcctTCTTCCAAACACTGATGGGTTATGGTACATTGTTATTTATGACAATGCCACTATTGAGCATgccaataaaattatttttattatataaaaataaaaaggaaaaagcta
>XM_034307582.1
GTTTCTAAACCCTATGTAGTGCGCTGTGAGACTAAAGACAGAGCCATTTGGGATGCAGCCATTCTTTCCCGGATATGTTGTAGCTTGCTAACTAAAGCTGTCAGAATGGAGTAGTTCGAGCTCAGAGCAGAGAAGAGCAGAGTGAAATGAGAGCTGTTCTGCTGTTTCTCTACATCTCTACATCAGTCCCTGTTATCAGAGGCACACTCTCAAAAACAGATGCCAAAAAACTCAACAAAGTGCAGGAGGCGGAGacaGCTATTGCGGAGCAGCCGGTGCAGGAGCGGGGTTTGATAGTGACCACTCCCCAGTGGAGGGATGtagtgagagaagagaagagatttTGCCCTCAGACCATATCAACACATCACTTCCAGGGAGCAGTGCTGGGTTACATCACACCGTGGAACTCCCATGGGTATGACATTGCTAAGGTTTTCGGGCCTAAGCTGACCTCTGTGTCTCCGGTATGGCTCCAGCTCAGACGCAAAGGACCAGAAAGCTTTGATATCACCGGCCTGCATGACCATGACCAGGGTTGGGTCAAGGCTGTGAGGAAagccaacaaaaaaaataaaatatTACCTCGGCTATTATTTGATGGCTGGTCTTATCAGGACTACGTGAGCGTCCTGGACAGTGAGGATGAGATTGAGGAGATTGGCAGAGAAATTGTTGAGGTGGCAAAGGCAGAAGGTTTTGATGGCTACACTCTGGAACTGTGGAGTCAGCTGGGAGGAAACAAGAGAAAGGAGCTGATCCACTTGGTTACACACCTGTGCAAGTACCTGAAGGCTGGAAAGCTTACGTGCATCCTTGTCATTCCTCCAGCTATCATCCCTGGGTCAAACCAACCAGGCATGTTTGGAAGGGAAGACTTTGAAAAACTGGCTCCTGTCGTTGATGCATTCAGCTTGATGACTTATGACTATTCCAGTCCGGGCAGACCAGGCCCTAGTTCTCCACTGCCCTGGATGCGAGATTGTGTGCTGCAGCTCGCACCACAGAGCCAGTGGAGATACAAGATCCTGCTGGGTCTCAACCTGTATGGCCTCGACTTCACTGTCAATGGGGGAGCTGAGCCCCTGCTGGGGGGCAGGTACATCGAGCTTCTGAAGGAAGTCAAACCAAAGCTTGTTTGGGATGAGTATGCAGCAGAACACTATTTTACTTACAAAAGAAGTTCAGTGAAGCATACTGTCTATTATCCAACTCTGAAGACTCTCGAACTACGAATTGCACTGGCAACAGAACTGGGTACAGGAATCTCTTTGTGGGAACTTGGACAAGGCTTGGACTATTTCTATGACCTTTTGTGAATTGGGCTGAGACAAACAAACCCACgtggacacacacaaaaaaatgtaattcctTCTTCCAAACACTGATGGGTTATGGTACATTGTTATTTATGACAATGCCACTATTGAGCATgccaataaaattatttttattatataaaaataaaaaggaaaaagcta

Function

symbol description
chid1 Predicted to enable oligosaccharide binding activity. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in lysosome. Predicted to be active in extracellular region. Is expressed in hatching gland; notochord; and polster. Orthologous to human CHID1 (chitinase domain containing 1).

NR:

description
chitinase domain-containing protein 1

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function

KEGG:

id description
K17525 CHID1; chitinase domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307580.1 True 1504 mRNA 0.46 13 19285786 19292110
XM_034307581.1 False 1502 mRNA 0.46 13 19285785 19292110
XM_034307582.1 False 1481 mRNA 0.47 13 19286117 19292110

Neighbor

gene id symbol gene type direction distance location
thoc5 thoc5 coding upstream 5203 19269694 ~ 19280582 (+)
LOC113530162 LOC108274540,LOC103046250,LOC108428357 coding upstream 45147 19237672 ~ 19240638 (+)
prnprs3 NA coding upstream 59369 19221929 ~ 19226416 (+)
incenp incenp,LOC107701072 coding upstream 69438 19204494 ~ 19216347 (+)
ccdc77 ccdc77,LOC107754361 coding upstream 110681 19167269 ~ 19175104 (+)
mov10l1 mov10l1 coding downstream 139316 19431426 ~ 19446347 (+)
szl LOC108274651,LOC108428364 coding downstream 157433 19449543 ~ 19451833 (+)
dbx2 dbx2 coding downstream 164639 19456749 ~ 19464228 (+)
nell2a nell2,LOC108428412,LOC107661281,LOC100380741 coding downstream 183408 19475518 ~ 19542669 (+)
LOC113529538 LOC108275145 coding downstream 300391 19592501 ~ 19595962 (+)
G151395 NA non-coding upstream 57892 19226649 ~ 19227893 (+)
G151134 NA non-coding upstream 174812 19109843 ~ 19110973 (+)
G151084 NA non-coding upstream 287853 18955049 ~ 18997932 (+)
G151093 NA non-coding upstream 339843 18945275 ~ 18945942 (+)
LOC113530068 NA non-coding upstream 664964 18601539 ~ 18620821 (+)
G151417 NA non-coding downstream 25876 19317986 ~ 19393161 (+)
G151419 NA non-coding downstream 101764 19393874 ~ 19397489 (+)
G151421 NA non-coding downstream 106168 19398278 ~ 19400388 (+)
G151445 LOC108274686,LOC108415052 non-coding downstream 111199 19403309 ~ 19403657 (+)
G151447 NA non-coding downstream 111862 19403972 ~ 19404398 (+)
G151401 NA other upstream 21892 19260624 ~ 19263893 (+)
faap24 faap24 other upstream 160584 19121151 ~ 19125201 (+)
nfat5a LOC108274760,LOC108428435 other upstream 489526 18747827 ~ 18796259 (+)
urahb LOC108274538 other upstream 561099 18721595 ~ 18724686 (+)
rfwd3 rfwd3,LOC107754982 other upstream 602357 18675010 ~ 18683428 (+)
srpk2 srpk2,LOC106907745,LOC108428417,LOC103366878,LOC101063511,LOC103134474 other downstream 31221 19323331 ~ 19384904 (+)
LOC113529760 adamts20,LOC107733613,LOC106907901 other downstream 369733 19661843 ~ 19748080 (+)
LOC113529593 LOC108275426,LOC108432651,LOC103374925,LOC107389115,LOC106531033 other downstream 2760504 22052614 ~ 22058158 (+)
arpp19b arpp19,LOC108275368,LOC107740885,LOC107569706,LOC103909813,LOC107673248,LOC107670207,LOC107559970 other downstream 2784739 22076849 ~ 22078496 (+)
G153014 zmp:0000001167,LOC108274702,LOC107754369,LOC107551438,LOC107561184,LOC107655150 other downstream 2924165 22216275 ~ 22266382 (+)

Expression


Co-expression Network