rragcb (rragc,LOC108275365)


Basic Information

Item Value
gene id rragcb
gene name rragc,LOC108275365
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 4468122 ~ 4479494 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307648.1
ggagaagacgAGGTCACGTGATCCCCTGCGCACTAACTTCCGgcttgtgtgtgtagtgaagtcATGTAGCAGAGCAGGCGGAGAGATTATAACcctgtagtgtgtgagagtgtgtaaatgagtgtataaatgagtgtgtaagtgtgtgtaggtgtgtgttactCCTCTTCTgagctgtgcgtgtgtgtgtaaatgagtgtgtagaGGTTTACGTGCTTTAAAGTTGAGATTAGTTTAGAGATTAAACGTTAAACATGTCGGTGCAGCACAGCGCAGAGAGCCTGGCCGGCTCCGGGGCcaatcttcatcatcctcatcatcctcacccTCATcaccttcctcttcctcatcatcatcatcctcaccttcctcatcatcctcaccttcctcatcctcatcacctTCCTCATCCTCAGCTCCGTAAAGAGGAGGATTTGTGTAAAGATGGTCTGGGTTACGGTgtagaggaggaagaggaagaggaagaggaagaggacagTGAGGAGGACATTTCACCTGCACAGGACAACGACAAACCCAAAATCCTGCTGATGGGCCTCAGGCGCAGCGGCAAATCCTCCATACAGAAGGTTGTCTTCCACAAGATGTCCCCCAACGAGACGCTGTTCCTGGAGAGCACTAATAAGATCTACAAAGACGACATCAGCAGCAGCTCCTTCGTTCATTTTCAGATCTGGGATTTCCCGGGGCAGGTGGATTTCTTCGACCCCACGTTTGATTATGAGATGATTTTCAGAGGCACCGGAGCGCTTATCTTCGTCATCGACGCACAGGACGACTACATGGAGGCTCTGGGAAGGCTGCACCTCACCGTGTCCCGCGCCTACAGAGTCAACCCCGACATCAACTTCGAGGTGTTCGTGCACAAGGTGGACGGTCTTTCAGACGACCACAAGAtcgagacacagagagacatccACCAGAGAGCTAACGACGACCTGACAGACGCCGGCCTCGACAAACTGCACCTCAGcttttACTTGACCAGCATCTACGACCACTCGATATTTGAGGCATTCAGTAAAGTGGTGCAGAAGCTCATCCCTCAGCTGCCCACGCTGGAGAACCTCCTCAACATCTTCatatcgaacTCAGGGATTGAGAAGGCGTTCCTGTTTGATGTGCTCAGTAAGATCTACGTGGCCACAGACAGCTCTCCCGTGGACATGCAGTCGTACGAGCTGTGCTGCGACATGATCGACGTGGTCATCGACGTCTCCTGCATTTACGGGCTGAAGGAGGACGGCAGTGGCACTGCGTATGACAAAGACTCTTTGGCCATCATTAAGCTGAACAACACCACTGTGCTCTACCTGAAGGAGGTCACCAAGTTCCTGGCGCTGGTGTGTATCCTGAGAGAGGAGAGCTTCGAGAagaaagGTCTGATAGACTACAATTTCCACTGTCTGAGGAAGGCCATACACGAGGTATTCGAGGTGACCGTCGTCCGGAGGAGCTGCTTAGATGATCAGCTCGACTCTCCTGGCTGCAGCAGCAGCGCTGTTAAAGCTCCGGTGCTCAACGGCACCCCTAGAGGCCGGATGTGACATCACATGGGGCGGGGTCTTCCTCAGGAGGGGAGGGGCTTCTAAACTGAGGAGAATACATGGGCTTTGGGTGTGTCTGCTTCTTGGAGGAGAGCGGGACCTGGAGCAGGTTTAAAGGGTGAACTCTGAATCTGCACTGCTgcattaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgccgtGTGCCGAGATGTCTGTGATTTGTTCAACCATTCTCATCGCTCTTAAAGGGGAACTTCCTACTAAAAAAATTGTACCACAGATCTATTCAATCTACATTCACACTGGAGCTTCAAGGCTATTATAGCGAACAGTTAAGGGAAAACTAAGAGAAAAATCTTGTTCCTTTTTTTGAGAAAACGCAGCGAAGATTTCTGTGAGTTGTTACGAAGTGTTTAGGGTTAACGAGCGTTTTTACACCTCGCAGTAATCGTAGCCTTTCACACTCGCCTCGTCCTGGGAAAATTCCCGATGTCTGACTATTTTTCCAGACTCACTGCTAATTCATTTATTCCACACGGACacaggaataaaaatatttcctttaatcGACATTTTCCGAAAGACATTGTGATATAATCACATGTATAAACATACGATTTTATCTCTGTTTACACCCTTAAGCTGAGAAACTTCTGGAAATATTTCTATTCCTGTGCCTGGGATAAGGAAACGTGGGTGTGTTTGTAGAATCGCTGCTCATTCGTTTATCCCAAGCAGAAGAATTTCCGGAATTTTCTCTGTTTAAAAGTGTGGATCGGGAGAAAACACTACATTTCCGATTACGA

Function

symbol description
rragc Enables several functions, including GTPase binding activity; guanyl ribonucleotide binding activity; and protein heterodimerization activity. Involved in cellular response to amino acid starvation; regulation of TORC1 signaling; and response to amino acid. Located in lysosome and nucleoplasm.

NR:

description
PREDICTED: ras-related GTP-binding protein C-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K16186 RRAGC_D; Ras-related GTP-binding protein C/D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307648.1 True 2376 mRNA 0.49 7 4468122 4479494

Neighbor

gene id symbol gene type direction distance location
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding upstream 421474 4009919 ~ 4046648 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding upstream 651499 3702496 ~ 3816623 (+)
rps5 rps5,LOC105903695 coding upstream 1099575 3362400 ~ 3368547 (+)
stpg1 stpg1 coding downstream 46121 4525615 ~ 4530986 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding downstream 58002 4537496 ~ 4593588 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding downstream 126827 4606321 ~ 4631426 (+)
si:dkey-206d17.12 LOC108275399 coding downstream 191556 4671050 ~ 4690613 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding downstream 423406 4902900 ~ 4905863 (+)
G143186 NA non-coding upstream 213171 4254724 ~ 4254951 (+)
G143185 NA non-coding upstream 213454 4254432 ~ 4254668 (+)
G143125 NA non-coding upstream 341327 4126590 ~ 4126795 (+)
G143048 NA non-coding upstream 398546 4068358 ~ 4069576 (+)
G142999 NA non-coding upstream 535102 3926059 ~ 3933020 (+)
G143312 NA non-coding downstream 11603 4491097 ~ 4543484 (+)
G143315 NA non-coding downstream 42380 4521874 ~ 4522693 (+)
G143316 NA non-coding downstream 43768 4523262 ~ 4571638 (+)
G143317 NA non-coding downstream 44504 4523998 ~ 4559387 (+)
G143322 NA non-coding downstream 77812 4557306 ~ 4558418 (+)
G142576 NA other upstream 1005951 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 1072055 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 1659485 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 1775280 2687795 ~ 2692842 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 1990164 2475158 ~ 2477958 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 5339 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 1261413 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 2107717 6587211 ~ 6593605 (+)
G144353 NA other downstream 2300495 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 2304022 6783516 ~ 6785437 (+)

Expression


Co-expression Network