XLOC_005259 (si:dkey-239j18.2)



Basic Information


Item Value
gene id XLOC_005259
gene name si:dkey-239j18.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16592408 ~ 16595406 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00010115
tcTTCCAGGCAGGATGATGTTTGCTTTGCTCGTCACGCTGTACATAAGTGCAGTGTTTGCTGCTCCATCTATAGACATCCAGTTAGATGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACGTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTTAGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCGGACGTCACAGGGCCCGTTGTTCATGGAACCCAAATTTTTTGCAGCCCCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCATTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACATGGCAATCAAGGGTGTAATGGAGGCCTCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGCTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATTCCCAAAGGTAATGAGCTTGCCCTAATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCTCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTACCAGTCAACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCATTGCGACAATGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGACACAGTTAtggtttctctttttttaatgtgttatttattcaattttttcaaTTTGTTCTGCTGTTAGGGCTATGATAGTAGTATTTTAGGAAATTCcatttttcctaaaaaaaatatttcatatatgCTTGTTTATCCAGGAATGAGAATTCTGTACTGGATCTATTTCACCTGCAAATTGATAAACATAAAATTTTCTTGATGGCAATCTCAAGTCTGTATGGTTTATTTGCACTTCGTGTAGGAAAACCATAAATATTAAATGCTTAAAGTCTTCCTTGCAGTAGACCTGTGAGCAATTTAATGGAGCAAATTAAGACTAAGCTATTCTGATTATGTAAAAAAATTCTGTATAACCGGATCAaattaccac
>TCONS_00010116
ACAGTCAGTAAGGTTTGCTTGTGAAAGtcTTCCAGGCAGGATGATGTTTGCTTTGCTCGTCACGCTGTACATAAGTGCAGTGTTTGCTGCTCCATCTATAGACATCCAGTTAGATGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGACGTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTTAGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCGGACGTCACAGGGCCCGTTGTTCATGGAACCCAAATTTTTTGCAGCCCCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCATTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACATGGCAATCAAGGGTGTAATGGAGGCCTCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGCTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATTCCCAAAGGTAATGAGCTTGCCCTAATGAATGCTGTTGCTGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCTCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTACCAGTCAACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCATTGCGACAATGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGACACAGTTAtggtttctctttttttaatgtgttatttattcaattttttcaaTTTGTTCTGCTGTTAGGGCTATGATAGTAGTATTTTAGGAAATTCcatttttcctaaaaaaaatatttcatatatgCTTGTTTATCCAGGAATGAGAATTCTGTACTGGATCTATTTCACCTGCAAATTGATAAACATAAAATTTTCTTGATGGC

Function


symbol description
si:dkey-239j18.2 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-52 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome.

Ensembl:

ensembl_id ENSDARG00000095254

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00010115 False 1428 mRNA 0.42 7 16592408 16595177
TCONS_00010116 True 1288 mRNA 0.43 8 16592575 16595406

Neighbor


gene id symbol gene type direction distance location
XLOC_005258 FO704724.2 coding downstream 20099 16572195 ~ 16572309 (-)
XLOC_005257 si:dkey-269i1.4 coding downstream 34302 16555603 ~ 16558106 (-)
XLOC_005256 HTR7 coding downstream 67681 16522472 ~ 16524727 (-)
XLOC_005255 CABZ01044816.1 coding downstream 98940 16493352 ~ 16493468 (-)
XLOC_005254 rpp30 coding downstream 140208 16446228 ~ 16452200 (-)
XLOC_005260 BX465840.1 coding upstream 3337 16598743 ~ 16598857 (-)
XLOC_005261 ctslb coding upstream 21732 16617138 ~ 16619757 (-)
XLOC_005262 si:dkey-239j18.3 coding upstream 39036 16634442 ~ 16636627 (-)
XLOC_005263 BX465840.2 coding upstream 59275 16654681 ~ 16654795 (-)
XLOC_005264 ctslb coding upstream 96178 16691584 ~ 16720434 (-)
XLOC_005250 NA non-coding downstream 732539 15857732 ~ 15859869 (-)
XLOC_005247 NA non-coding downstream 1142150 15445574 ~ 15450258 (-)
XLOC_005246 NA non-coding downstream 1348408 15242567 ~ 15244000 (-)
XLOC_005265 BX322603.1 non-coding upstream 147646 16743052 ~ 16746547 (-)
XLOC_005269 BX000534.2 non-coding upstream 306239 16901645 ~ 16901759 (-)
XLOC_005272 NA non-coding upstream 346798 16942204 ~ 16943248 (-)

Expression



Co-expression Network