LOC117598174


Basic Information

Item Value
gene id LOC117598174
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2288098 ~ 2291206 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034307688.1
atcacagaaacacagactaacatgacagaaagACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTGGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACACGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAgatcaataaattaatattggAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAA
>XM_034307689.1
ttttccccaacactaacaAAGTCACACACCAGCGTAACGAACACTAAGTTTAACTACACCAAAACAACTGACTAGAACAAAGCGGGGGAAACACGGACCAAATGacatacaagaacaaaaaacacagtaaggcagcgGGACTGGAATGAACAAAACAGAGGTACAACTGGGTTTGGTGTTAACAGCCAGAACAACAACTTCCGCATGAATGAAGGGTTGcgggttttaaataggcggggtcagaggttTATTGGTGGTCGAGGCAAATGACATCAGCGGGGATCATCGAGACGgacaggaacgttatccaatCAGCGGATTTATTCCCGAAGATTGAGAGTGAAATTGTGTGCTCTAACATGAACATGAGTGAAGGTGAGAGGAGGAGCGAAGGAGGACTCTGGCTCAGCGGGAACTCGGACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTGGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACACGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAgatcaataaattaatattggAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAA
>XM_034307690.1
TGAAATGCTTTTAGCTGAAATACTTTACTGGATCcaacagttattttaaaaaattgttggtttttttttattcatatttagacTGTTAGATTTTTACTGCTTCAACAACGTTGaggttaaatttttttcatgagTAGAGCAGCAGCATCAGTACACGAGTGAACATGAACACGATCTCGATTACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTGGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACACGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATATGAGGATCGTGTGGACGTTCCTGAGGAGGAACTGCTTAAAGGAAACTGTTCCCTGGTGTTGAAGAACATCAGAAACACTGATCAGGGAATCTACACCTGTTCACTGATGACAGGACACAGGAAGAGATCTGCCATGACCAACAAGGACTTCATCCAGAGTGTTACACTCCTCCTAgatcaataaattaatattggAGCTTTAACGTTTTATCATATTTTGTACCTGCAACGCCATTAAA
>XR_004578868.1
TGAAATGCTTTTAGCTGAAATACTTTACTGGATCcaacagttattttaaaaaattgttggtttttttttattcatatttagacTGTTAGATTTTTACTGCTTCAACAACGTTGaggttaaatttttttcatgagTAGAGCAGCAGCATCAGTACACGAGTGAACATGAACACGATCTCGATTACAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAAAGTCTGTTTGTATCTGCATCTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACACAGCGGTCCTGCCATGTAAATTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034307688.1 False 526 mRNA 0.45 3 2290253 2291206
XM_034307689.1 True 914 mRNA 0.46 3 2289677 2291206
XM_034307690.1 False 676 mRNA 0.41 3 2288098 2291206
XR_004578868.1 False 340 misc_RNA 0.38 3 2288098 2288639

Neighbor

gene id symbol gene type direction distance location
LOC117598177 NA coding upstream 10102 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 13335 2273591 ~ 2274763 (+)
LOC117598027 NA coding upstream 28624 2257540 ~ 2259474 (+)
LOC113545612 NA coding upstream 32262 2249486 ~ 2255836 (+)
LOC113545586 NA coding upstream 48799 2226921 ~ 2239299 (+)
LOC117598175 NA coding downstream 2183 2293389 ~ 2294516 (+)
LOC117598085 NA coding downstream 10160 2301366 ~ 2302762 (+)
LOC117598106 NA coding downstream 83493 2374699 ~ 2383793 (+)
LOC117598108 NA coding downstream 259099 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 377921 2669127 ~ 2676154 (+)
G142391 NA non-coding upstream 1957 2280360 ~ 2286141 (+)
LOC113545551 NA non-coding upstream 61302 2220567 ~ 2226796 (+)
G142305 NA non-coding upstream 162702 2084785 ~ 2125396 (+)
G142302 NA non-coding upstream 184169 2054999 ~ 2103929 (+)
G142301 NA non-coding upstream 235407 2052458 ~ 2052691 (+)
G142385 NA non-coding downstream 7778 2298984 ~ 2301918 (+)
LOC117598178 NA non-coding downstream 7970 2299176 ~ 2300055 (+)
G142411 NA non-coding downstream 67593 2358799 ~ 2359457 (+)
G142429 NA non-coding downstream 80918 2372124 ~ 2372355 (+)
G142420 NA non-coding downstream 100138 2391344 ~ 2396251 (+)
LOC117598179 NA other upstream 8211 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 16512 2270050 ~ 2271586 (+)
LOC113545687 NA other upstream 105045 2069238 ~ 2183053 (+)
LOC113524920 NA other upstream 202220 2055031 ~ 2085878 (+)
LOC113523891 ehmt2 other upstream 665308 1615143 ~ 1622790 (+)
LOC117598173 NA other downstream 3953 2295159 ~ 2297706 (+)
LOC117595676 LOC108274861 other downstream 44003 2335209 ~ 2357993 (+)
LOC117598105 NA other downstream 82017 2373223 ~ 2558727 (+)
LOC113523823 NA other downstream 139939 2431145 ~ 3032526 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other downstream 183952 2475158 ~ 2477958 (+)

Expression


Co-expression Network