LOC113523814 (LOC108279645)


Basic Information

Item Value
gene id LOC113523814
gene name LOC108279645
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3183316 ~ 3184699 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402460.2
GAAGCATGGACTGCcaatgcaaagtgtgtgtgtgtgtgtgtgtgtgtgcagtgcactGTGAAAGAGGTTTTTGTATGATGGTTTCATTAGATTGTATCACTGTGGAGGACTTTTGGTGGAGGCTCCAGAATCATCATTAAAACGGGTCCCACAGCTCCCTCCGTGTCTCTGCTCCCTCCGTCTCCTCTGCAGCTGTGTGAGGGATCGGCctcgctgctctgcctgctgtctgGCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCAGAGGTGAAGGACGGGGTTCTGACCAGtgcagaagaagagaagaagggcGGTTACACACGCAGTagcaccctgaccctcagcaaagacctctgggaaaagggggaggagttTATCTGCACGGCCTCCCATGACGGTGTGAATCATCCGGTCAAGTTCAGAAAGAGTCAGTGTGAAGGCTAGTGGCTCCAAGATAGAGTTTAACATAGAGCTGCTTATGATCCATCTACAATAGAGTTTCAATTCTACACAATGCTgccatttctgtctttactctgtTCACTGTCCTGTTGATCTTCCTGTAGCttttgctgaaataaagctgaatttcGGA

Function

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type substrate 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402460.2 True 610 lncRNA 0.50 2 3183316 3184699

Neighbor

gene id symbol gene type direction distance location
slc39a7 slc39a7,LOC107395789 coding upstream 29470 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 59602 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 121979 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 285059 2893487 ~ 2898257 (+)
LOC117598059 LOC108274858,LOC108274862 coding upstream 427049 2753429 ~ 2756267 (+)
LOC117597933 LOC108279645 coding downstream 63825 3248524 ~ 3249755 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding downstream 109100 3293799 ~ 3308324 (+)
ppt2b ppt2,LOC103364422 coding downstream 161873 3346572 ~ 3356643 (+)
rps5 rps5,LOC105903695 coding downstream 177701 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 179516 3364215 ~ 3364348 (+)
LOC113523815 NA non-coding upstream 6333 3174738 ~ 3176983 (+)
G142504 vps52,LOC107394440 non-coding upstream 72996 3109517 ~ 3110320 (+)
G142502 NA non-coding upstream 78673 3103419 ~ 3104643 (+)
G142469 NA non-coding upstream 189350 2856930 ~ 2993966 (+)
G142478 NA non-coding upstream 189842 2951067 ~ 2993474 (+)
LOC113523831 LOC108279645,LOC108274854 non-coding downstream 7241 3191940 ~ 3193368 (+)
LOC117598030 LOC108274854,LOC108279645 non-coding downstream 13177 3197876 ~ 3199324 (+)
LOC117598172 NA non-coding downstream 19762 3204461 ~ 3215786 (+)
trnac-gca_1 NA non-coding downstream 31278 3215977 ~ 3216048 (+)
trnac-gca_2 NA non-coding downstream 32719 3217418 ~ 3217489 (+)
LOC113523823 NA other upstream 150790 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 374679 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 490474 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 624589 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 705358 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 199481 3384180 ~ 3396067 (+)
G142576 NA other downstream 212971 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1300134 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2556208 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3402512 6587211 ~ 6593605 (+)

Expression


Co-expression Network