LOC113523858


Basic Information

Item Value
gene id LOC113523858
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3368205 ~ 3368338 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003402471.1
agcGAGACTAGAGTCACATCCCGACGCTGTTCGTCGTCCTGGTGTGCTATAGCTCTCGCAGATTAATCCCTCTCTGCTTATTCATTGGCTGCTGCTTCTCCATCGCTCAGCCAATCACCAGCTCAGAAACACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003402471.1 True 134 ncRNA 0.52 1 3368205 3368338

Neighbor

gene id symbol gene type direction distance location
LOC113523859 NA coding upstream 1947 3366125 ~ 3366258 (+)
LOC113523857 NA coding upstream 3857 3364215 ~ 3364348 (+)
ppt2b ppt2,LOC103364422 coding upstream 11562 3346572 ~ 3356643 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding upstream 59881 3293799 ~ 3308324 (+)
LOC117597933 LOC108279645 coding upstream 118450 3248524 ~ 3249755 (+)
khdrbs3 khdrbs3,LOC107687064,LOC107727300,LOC107566726,LOC102789115 coding downstream 334158 3702496 ~ 3816623 (+)
LOC113523835 LOC108274547,LOC107554574,LOC107669946,LOC107727308 coding downstream 641581 4009919 ~ 4046648 (+)
rragcb rragc,LOC108275365 coding downstream 1099784 4468122 ~ 4479494 (+)
stpg1 stpg1 coding downstream 1157277 4525615 ~ 4530986 (+)
map7d1b map7d1,LOC108274711,LOC108438234,LOC107734037,LOC107551771,LOC107669943 coding downstream 1169158 4537496 ~ 4593588 (+)
G142545 NA non-coding upstream 16086 3283128 ~ 3352119 (+)
G142553 NA non-coding upstream 47037 3312761 ~ 3321168 (+)
trnac-gca_12 NA non-coding upstream 107260 3260874 ~ 3260945 (+)
trnac-gca_11 NA non-coding upstream 107793 3260341 ~ 3260412 (+)
trnac-gca_10 NA non-coding upstream 108326 3259808 ~ 3259879 (+)
G142573 NA non-coding downstream 11383 3379721 ~ 3381739 (+)
G142580 NA non-coding downstream 22567 3390905 ~ 3391147 (+)
G142575 NA non-coding downstream 47184 3415522 ~ 3435565 (+)
G142584 NA non-coding downstream 51214 3419552 ~ 3421435 (+)
G142908 NA non-coding downstream 248838 3617176 ~ 3624288 (+)
LOC113523823 NA other upstream 335679 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 559568 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 675363 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 809478 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 890247 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 15842 3384180 ~ 3396067 (+)
G142576 NA other downstream 29332 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1116495 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2372569 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3218873 6587211 ~ 6593605 (+)

Expression


Co-expression Network