LOC113529600


Basic Information

Item Value
gene id LOC113529600
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 10755909 ~ 10758807 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403072.2
AAGGTGTGCAGGTGGTGAAAATTCAAATcggacaaaaaaaatctaattcgTGTACTGTGGTAAGCCAGGCGAGTATTGAACTCCATAGCACTGTGTAAAGCTGAGCAAACCTTACTTTTAAGAGACTTTCCTCTGTTTGTTAGTAGACTAGACACTAGACAACTACAGAaagaaaacgaaaaaaaaagaaaagaaaaacacagatgcAGTAAAGTGTTCAAAAACACGTTTTAGTTCCAAACCGGCTGCTGGTGTTTGTGATGATGGGGAGATGAGCGGTCAGAAAGCAGGTGTGTGTGCTTCAGTTATGTGGGGAAGAGATGGatgcaccaggatgcactatgggaagaagacaagctggcggaggcagtatgatgctctggACCGAGTACAGCCCTTCATGGCACctgtattctctaatggcagtggcctctttcagcaagatctcagtccagtcgagcatctgtggaatgtgctgg

Function

GO:

id name namespace
GO:0022412 cellular process involved in reproduction in multicellular organism biological_process
GO:0048477 oogenesis biological_process
GO:0007281 germ cell development biological_process
GO:0007292 female gamete generation biological_process

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403072.2 True 479 lncRNA 0.45 4 10755909 10758807

Neighbor

gene id symbol gene type direction distance location
LOC113529863 pcdh2ac,LOC108275110,LOC108430948,LOC107660888,LOC107588302,LOC107754492,LOC107655665 coding upstream 7264 10710206 ~ 10748645 (+)
LOC117598101 LOC108275110,LOC108275116 coding upstream 46375 10706985 ~ 10709534 (+)
LOC117598044 LOC108275110,LOC108275116,LOC108275111,LOC106611847 coding upstream 50448 10700557 ~ 10705461 (+)
LOC117598100 LOC108275110 coding upstream 61825 10691379 ~ 10694084 (+)
LOC113529654 LOC108275110 coding upstream 75994 10677199 ~ 10679915 (+)
LOC113529576 LOC105891230 coding downstream 21303 10780110 ~ 10782530 (+)
LOC117597911 LOC108274931,LOC108274936,LOC108438834,LOC108274937 coding downstream 24385 10783192 ~ 10786436 (+)
LOC117597913 LOC108274937,LOC108274933,LOC108274931,LOC108438833 coding downstream 44852 10803659 ~ 10804439 (+)
LOC117597886 LOC108274931,LOC108274933,LOC108438829,LOC108438834,LOC108274936,LOC108274937 coding downstream 45632 10804439 ~ 10811195 (+)
LOC117597912 LOC108274933,LOC108274937,LOC108274931 coding downstream 53131 10811938 ~ 10813122 (+)
G146168 NA non-coding upstream 229051 10526543 ~ 10526858 (+)
G146141 NA non-coding upstream 304886 10450676 ~ 10451023 (+)
G145966 NA non-coding upstream 544414 10208004 ~ 10211495 (+)
LOC113530164 NA non-coding upstream 565716 10170715 ~ 10190193 (+)
G145950 NA non-coding upstream 651721 10103985 ~ 10104188 (+)
G146322 diaph1,LOC107754500,LOC107660904,LOC107588363,LOC107747105 non-coding downstream 136934 10895741 ~ 10896384 (+)
G146308 NA non-coding downstream 257288 11016095 ~ 11017354 (+)
G146377 NA non-coding downstream 292409 11051216 ~ 11051420 (+)
G146380 NA non-coding downstream 294360 11053167 ~ 11053425 (+)
G146513 NA non-coding downstream 462774 11221581 ~ 11293483 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 160308 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 207980 10537251 ~ 10547929 (+)
G145233 LOC107676291 other upstream 1913643 8841476 ~ 8842266 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 3289357 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 3799393 6956445 ~ 6956516 (+)
hrh2a LOC108274475 other downstream 536321 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 836692 11595499 ~ 11597970 (+)
G147542 NA other downstream 2158112 12916919 ~ 12917254 (+)
zgc:172145 LOC108275003 other downstream 2590516 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 2614065 13372872 ~ 13389196 (+)

Expression


Co-expression Network