LOC113529609


Basic Information

Item Value
gene id LOC113529609
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16068429 ~ 16092930 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403074.2
TTCTCCTAAGGCACACACATCTAGTTCCTAACATTATTTAACCTGCACTAGTGCCAGCCTCGGGAGTGAAAGCTGTCTGACAGTACTGCATACAGTCTACCTCCTGATGTCATCTAACGATTATTTCATGGTCCTTCACTGCTGGAAATGGCCTTTTCAATGTATAAGTCTGAGACATTGCAGACAAGGATGAGGAGCGGTCATGGAGTGCATACACTACCCCACCCACCCTGCTTCCAGCCCAGACTGAAAAAAACTCAGCGGCCCAGGAACACCACAGGCAGGTTGTGTTCTTGTGGACAGGCAACCTCTTCCTAGACAACACAGCTACCCTGTCCTTGGGTTGGcttcatgttcacacacacacacataaacagcgTCGCTTCAGAGGTCCATGTGACCAGGCGAGCCAGGCAAGTTAACGTCTGGCTCCTATAAAGGCCGTCTTCTTCAGTCGAGAGGATAAGATCAGCCGAGGGTCGTGTCTCAGGTTTCCATGAAaggattaaaaagtaaacaactGAGAATTTGAGCCAATCCCTCTTTAAGGAGATACACGTTTCACCGAAAGCACGGTGTATACCTCTCTGAGGCCCTCGATAATGATACTATGGGAACAAAGTTGACTTCATTCATATGTAATGTGTCTGTGATTGTTCAGTCTTTCATGGACATGAGAGCAGGTTTTGTCCATAAGTTGTATATAAATATCctcacatttttacaaaataacattttagctaaAAACACTGCATCTGCTGTAATTTTCAGACAGGAATTTGATTGTGTTACCCTATAAGTGTTTGATAGGCAGATATGCTGATTACTGACTTGGCCTACAACTTGGCCTTAGGGTGGGAAACTGTCAGGGCAATCCAGAGGGAAAGGAGCAATATTCAGCAGCAAGTGCAAGCAGGTTCAAACCTGCCTTGCTGTGCATTATTAAAAGCCTCTACATCACCTGCACAATTACCAGAAATATAACACACTCACAAGGAGGGAAGAAAATGTGTACGCCTGTGCAAATGTATCATATAAGACATAAACTCCAGGTAATACAAAAACACAGTGTACACAATCTAAGAAAGCACCGAATTATAGACaagatataagatataagacAATATACTAATAACATATTATAGATAAACATTTAATGCATTAACAGACTTATGCAAATCAAAGGATTCATacattcactttcagtaactgctttatcctggtcagggttgtggcggagctggagcctatcccaggaatgctGGGTGTAAGGTGGAAAAACACCATGGATGGAACACAAGTCCATCACagaacaccatgcacacacattctcacctgGGGACAAGAGTAGCCTAACCGGAGAACCTGAAAGAACCCTGTGCGGGCACtgtgagaacatgcaaaattctgCACAAGGAGTAACCAGAGCTGAGGACTGAACCAGGAACCCTGAAACTAAGAGTCTCATATCTCTTCTGCATAGCTGCATATTCCCTACAGAAAAGATCTGACTCCACGGAGAGAACATCCTGAGGATATTGGCTACAGAAGAAAGGACTTTTAAGGCTCTTGTCAAAACATTTGACAATAAAATGCAAAGAACGCAAACACTTAGACACATTGGGTAAGGTTGGGGTTGTTAAGGTTGGGGAATTTACTATGTCTTGTGACCATATGGAATtcatttaaacatatctttaaTTTGGCTAGTAGCTTTATCCTGTCCAAGGAGCTAAAATAACTCTGTTGGCACGCTGCTTTCTGAGTGATGTTTTTGTTACATTCAGGGTTGATCCAAGGTCAGGTTTCCCATAATGCATTCTTGATAGTGTTGCTGGTTCCAGATCTGTATGCATGACTCTCaatctaattttttaaaaaagagacacTGCAGAAATGTCAGATCAGCTCACATCTCTGCAAAGTTTATTACTCCTATGCAACTGCATAGACAAAATTACTCCTATCTAGCTCTTGTTGTAGGTATCGACCAAAATCCCTGAGGAACAATATCAATATATCAACTACGAAACAATACAGTAAACTTATAATGTGACTAATCATTTTGCACGAAGGAACAAATTAGATATTTTGTAATTACAACCTTGACAGGCCACTGTGTACACTGTGAATGTTAAAGTTGTATCATATAAAGATAAAATTTCTCACACAAATATCATTACACACCTGGCAACACTGGATTAGCCTCCATTTCCAAGGTCCATTGTTTAAACAGGTGGAGCCAAgagctgtgtgttttaatgaaagcaGTGTGTTCATCCTGGGAAACTCAACAAGCTGCAATATAATACTAATACCTTGATGATGTACTAGAtccaatgaaaaataaagtgtgaaatGTGCAACACTTTTTGCACTCGTGGTTCGCATCCTGCTCTACGGATGATAAGAGAAGAAGCCATCAGTCTCCATGAGGCTTGAAATCTTCTAAATGGACAATGTACCAAGTGAGAACACTGTTTCACCACTAACACAAACAAGGAGCAAAACATTTAGGATGAACATTTTGGATTTCGAAAGTAGTGGTGTCCTTGTGAAGGAGGCTGTCCTTGTGAAGTTCAGTGAGGTTAGATGTACATGATTTGCATATACATGATGTCCATAATGTGTGATTTGATACATATTTCTCAATTTCTTTTAGTAGTATTAACcagtttgtatattttaatagtGTTTCCATGATTGTGGTGCTATTTAAccctttaaaaatcatttttatagtgAATATAAGAAAACTATGGGGTTACCCATTCAGAAATGTGTTAATCCATCAGACAATCATTTttacaaggttttttttctgataatgCTGTTACATTTTGCTGTCAAATGACTAACA
>XR_004578675.1
TTCTCCTAAGGCACACACATCTAGTTCCTAACATTATTTAACCTGCACTAGTGCCAGCCTCGGGAGTGAAAGCTGTCTGACAGTACTGCATACAGTCTACCTCCTGATGTCATCTAACGATTATTTCATGGTCCTTCACTGCTGGAAATGGCCTTTTCAATGTATAAGTCTGAGACATTGCAGACAAGGATGAGGAGCGGTCATGGAGTGCATACACTACCCCACCCACCCTGCTTCCAGCCCAGACTGAAAAAAACTCAGCGGCCCAGGAACACCACAGGTTGTGTTCTTGTGGACAGGCAACCTCTTCCTAGACAACACAGCTACCCTGTCCTTGGGTTGGcttcatgttcacacacacacacataaacagcgTCGCTTCAGAGGTCCATGTGACCAGGCGAGCCAGGCAAGTTAACGTCTGGCTCCTATAAAGGCCGTCTTCTTCAGTCGAGAGGATAAGATCAGCCGAGGGTCGTGTCTCAGGTTTCCATGAAaggattaaaaagtaaacaactGAGAATTTGAGCCAATCCCTCTTTAAGGAGATACACGTTTCACCGAAAGCACGGTGTATACCTCTCTGAGGCCCTCGATAATGATACTATGGGAACAAAGTTGACTTCATTCATATGTAATGTGTCTGTGATTGTTCAGTCTTTCATGGACATGAGAGCAGGTTTTGTCCATAAGTTGTATATAAATATCctcacatttttacaaaataacattttagctaaAAACACTGCATCTGCTGTAATTTTCAGACAGGAATTTGATTGTGTTACCCTATAAGTGTTTGATAGGCAGATATGCTGATTACTGACTTGGCCTACAACTTGGCCTTAGGGTGGGAAACTGTCAGGGCAATCCAGAGGGAAAGGAGCAATATTCAGCAGCAAGTGCAAGCAGGTTCAAACCTGCCTTGCTGTGCATTATTAAAAGCCTCTACATCACCTGCACAATTACCAGAAATATAACACACTCACAAGGAGGGAAGAAAATGTGTACGCCTGTGCAAATGTATCATATAAGACATAAACTCCAGGTAATACAAAAACACAGTGTACACAATCTAAGAAAGCACCGAATTATAGACaagatataagatataagacAATATACTAATAACATATTATAGATAAACATTTAATGCATTAACAGACTTATGCAAATCAAAGGATTCATacattcactttcagtaactgctttatcctggtcagggttgtggcggagctggagcctatcccaggaatgctGGGTGTAAGGTGGAAAAACACCATGGATGGAACACAAGTCCATCACagaacaccatgcacacacattctcacctgGGGACAAGAGTAGCCTAACCGGAGAACCTGAAAGAACCCTGTGCGGGCACtgtgagaacatgcaaaattctgCACAAGGAGTAACCAGAGCTGAGGACTGAACCAGGAACCCTGAAACTAAGAGTCTCATATCTCTTCTGCATAGCTGCATATTCCCTACAGAAAAGATCTGACTCCACGGAGAGAACATCCTGAGGATATTGGCTACAGAAGAAAGGACTTTTAAGGCTCTTGTCAAAACATTTGACAATAAAATGCAAAGAACGCAAACACTTAGACACATTGGGTAAGGTTGGGGTTGTTAAGGTTGGGGAATTTACTATGTCTTGTGACCATATGGAATtcatttaaacatatctttaaTTTGGCTAGTAGCTTTATCCTGTCCAAGGAGCTAAAATAACTCTGTTGGCACGCTGCTTTCTGAGTGATGTTTTTGTTACATTCAGGGTTGATCCAAGGTCAGGTTTCCCATAATGCATTCTTGATAGTGTTGCTGGTTCCAGATCTGTATGCATGACTCTCaatctaattttttaaaaaagagacacTGCAGAAATGTCAGATCAGCTCACATCTCTGCAAAGTTTATTACTCCTATGCAACTGCATAGACAAAATTACTCCTATCTAGCTCTTGTTGTAGGTATCGACCAAAATCCCTGAGGAACAATATCAATATATCAACTACGAAACAATACAGTAAACTTATAATGTGACTAATCATTTTGCACGAAGGAACAAATTAGATATTTTGTAATTACAACCTTGACAGGCCACTGTGTACACTGTGAATGTTAAAGTTGTATCATATAAAGATAAAATTTCTCACACAAATATCATTACACACCTGGCAACACTGGATTAGCCTCCATTTCCAAGGTCCATTGTTTAAACAGGTGGAGCCAAgagctgtgtgttttaatgaaagcaGTGTGTTCATCCTGGGAAACTCAACAAGCTGCAATATAATACTAATACCTTGATGATGTACTAGAtccaatgaaaaataaagtgtgaaatGTGCAACACTTTTTGCACTCGTGGTTCGCATCCTGCTCTACGGATGATAAGAGAAGAAGCCATCAGTCTCCATGAGGCTTGAAATCTTCTAAATGGACAATGTACCAAGTGAGAACACTGTTTCACCACTAACACAAACAAGGAGCAAAACATTTAGGATGAACATTTTGGATTTCGAAAGTAGTGGTGTCCTTGTGAAGGAGGCTGTCCTTGTGAAGTTCAGTGAGGTTAGATGTACATGATTTGCATATACATGATGTCCATAATGTGTGATTTGATACATATTTCTCAATTTCTTTTAGTAGTATTAACcagtttgtatattttaatagtGTTTCCATGATTGTGGTGCTATTTAAccctttaaaaatcatttttatagtgAATATAAGAAAACTATGGGGTTACCCATTCAGAAATGTGTTAATCCATCAGACAATCATTTttacaaggttttttttctgataatgCTGTTACATTTTGCTGTCAAATGACTAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403074.2 True 2860 lncRNA 0.40 4 16068429 16092930
XR_004578675.1 False 2856 lncRNA 0.40 4 16068429 16092930

Neighbor

gene id symbol gene type direction distance location
ca12 ca12 coding downstream 24577 16028155 ~ 16043852 (-)
man2c1 man2c1,LOC107752311 coding downstream 43571 16014920 ~ 16024858 (-)
sema7a sema7a coding downstream 63066 15997889 ~ 16005363 (-)
ccdc33 ccdc33 coding downstream 131851 15904320 ~ 15936578 (-)
pkp3a LOC108275089 coding downstream 203727 15848138 ~ 15864702 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding upstream 28727 16121657 ~ 16140904 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding upstream 48666 16141596 ~ 16165999 (-)
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding upstream 87987 16180917 ~ 16199115 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding upstream 143213 16236143 ~ 16238157 (-)
LOC113530180 LOC108274564 coding upstream 158414 16251344 ~ 16254496 (-)
G149366 NA non-coding downstream 164527 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 165787 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 170268 15897890 ~ 15898161 (-)
G149312 NA non-coding downstream 309928 15758284 ~ 15758501 (-)
G149305 fancf non-coding downstream 315959 15751159 ~ 15752470 (-)
G149495 NA non-coding upstream 142 16093072 ~ 16095175 (-)
G149631 rps27l,zgc:136826,LOC107598918,LOC107752326 non-coding upstream 87976 16180906 ~ 16238108 (-)
LOC117597941 NA non-coding upstream 137684 16230614 ~ 16231809 (-)
G149643 NA non-coding upstream 156231 16249161 ~ 16251085 (-)
G149649 NA non-coding upstream 161717 16254647 ~ 16255486 (-)
islr2 islr2,LOC107662462 other downstream 76335 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 348854 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 839444 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 980369 15086113 ~ 15088060 (-)
G148647 fjx1 other downstream 1255724 14810004 ~ 14812705 (-)
acsbg1 acsbg1 other upstream 48189 16141119 ~ 16228334 (-)
LOC113529460 nrg4 other upstream 960423 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 2111721 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2210212 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2211708 18304638 ~ 18304801 (-)

Expression


Co-expression Network