LOC113530223


Basic Information

Item Value
gene id LOC113530223
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 18304638 ~ 18304801 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403119.2
aTACTTACCTGGCAGGGAAGATACCATGATCAAGAAGCTGGTTCACCCAGGGcgaggctcagccattgcactcCGGTTGTGCTGACCCCtgcgaattccccaaatgtgagaatctcgactgcataatttctggtAGTGGGGGACTGCGTTCGCGCTCTCCCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403119.2 True 164 ncRNA 0.55 1 18304638 18304801

Neighbor

gene id symbol gene type direction distance location
washc4 kiaa1033,si:dkey-23p11.2,LOC107696292,LOC107678984 coding downstream 58934 18228113 ~ 18245704 (-)
lrrc10 lrrc10 coding downstream 85897 18216233 ~ 18218741 (-)
agbl2 agbl2 coding downstream 102013 18184111 ~ 18202625 (-)
ptprz1a ptprz1,LOC108274749 coding downstream 139828 18113006 ~ 18164810 (-)
asb15a asb15 coding downstream 383117 17914613 ~ 17921521 (-)
arid3b LOC108275332,LOC108436938,LOC107575848,LOC107752332 coding upstream 13823 18318624 ~ 18338423 (-)
LOC113530128 LOC108275329,LOC108436939,LOC103046663,LOC100697142,LOC101479677,LOC107576348,LOC107716663 coding upstream 35652 18340453 ~ 18347647 (-)
hcn4l hcn4,LOC108274590,LOC108436942,LOC107573709,LOC107696280,LOC102793391 coding upstream 73928 18378729 ~ 18398258 (-)
nptna LOC108274497,LOC108436943 coding upstream 99711 18404512 ~ 18420371 (-)
ube2q2 ube2q2,LOC108436947,LOC105015542,LOC107696278,LOC107661444 coding upstream 143341 18448142 ~ 18457983 (-)
G150854 NA non-coding downstream 1679 18301293 ~ 18302959 (-)
G150834 NA non-coding downstream 49220 18255075 ~ 18255418 (-)
G150776 NA non-coding downstream 192161 18112252 ~ 18112477 (-)
G150631 NA non-coding downstream 391783 17912640 ~ 17912855 (-)
G150551 NA non-coding downstream 544939 17759421 ~ 17759699 (-)
G150875 NA non-coding upstream 1408 18306209 ~ 18306443 (-)
G150891 NA non-coding upstream 33701 18338502 ~ 18338714 (-)
G150925 LOC108275437,LOC108436941,LOC107661438,LOC107696282,LOC107573699 non-coding upstream 68312 18373113 ~ 18376841 (-)
G150988 NA non-coding upstream 116692 18421493 ~ 18422644 (-)
G150989 NA non-coding upstream 117856 18422657 ~ 18423325 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other downstream 90151 18204651 ~ 18214487 (-)
LOC113529460 nrg4 other downstream 1245732 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 2076304 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 2312544 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 2585063 15711993 ~ 15719575 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 49173 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 120518 18425319 ~ 18428973 (-)
gatd1 pddc1,LOC102788149 other upstream 987408 19292209 ~ 19295843 (-)
zgc:114188 rps17,rs17,LOC107389132,LOC103042467,LOC108428414 other upstream 1074855 19379656 ~ 19392962 (-)
LOC113530226 NA other upstream 1082440 19387241 ~ 19387366 (-)

Expression


Co-expression Network