LOC113530224


Basic Information

Item Value
gene id LOC113530224
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16753176 ~ 16753281 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403120.2
GTCAGTGAAGGAGCGGGAGCTGTGAAACACACGTAACGATATAAAGAAGGTTAGCGTGGCCCTGCGCAAGGATGGCACGCAAAATCGTGAAACGCACTTAGTATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403120.2 True 106 ncRNA 0.49 1 16753176 16753281

Neighbor

gene id symbol gene type direction distance location
ice2 ice2 coding downstream 187174 16547325 ~ 16566002 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 206906 16540852 ~ 16546270 (-)
bnip2 bnip2 coding downstream 294781 16443455 ~ 16458395 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding downstream 390801 16325942 ~ 16362375 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding downstream 485190 16265562 ~ 16267986 (-)
c2cd4a LOC108275248,LOC108433606 coding upstream 135056 16888337 ~ 16890007 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 360473 17113754 ~ 17128284 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 387134 17140415 ~ 17234857 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding upstream 483832 17237113 ~ 17248412 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding upstream 496257 17249538 ~ 17255164 (-)
G149854 NA non-coding downstream 138760 16612984 ~ 16614416 (-)
G149841 NA non-coding downstream 254715 16496171 ~ 16498461 (-)
G149836 NA non-coding downstream 292131 16460791 ~ 16461045 (-)
G149718 NA non-coding downstream 328572 16422666 ~ 16424604 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding downstream 435250 16309890 ~ 16317926 (-)
G150089 NA non-coding upstream 265675 17018956 ~ 17019183 (-)
G150036 NA non-coding upstream 274836 17028117 ~ 17052512 (-)
LOC117597939 NA non-coding upstream 321965 17075246 ~ 17078085 (-)
G150130 NA non-coding upstream 372133 17125414 ~ 17150481 (-)
G150139 NA non-coding upstream 394620 17147901 ~ 17148608 (-)
acsbg1 acsbg1 other downstream 524842 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 761082 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1033601 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1524191 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1665116 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 300072 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1451370 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1549861 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1551357 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1600693 18353974 ~ 18364036 (-)

Expression


Co-expression Network