LOC113530226


Basic Information

Item Value
gene id LOC113530226
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19387241 ~ 19387366 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403122.1
CCCTGTATCGAAAGTGACCGTGGTGTCTGGTTGCCAGGTCATTGATACTACAGggagagaaaactgaaagtCTTTCCCGTGTTTGCTAGACAACGTGTTCTTGCCAAACCCTGTATCTTTCACACA

Function

GO: NA

KEGG:

id description
ko03450 Non-homologous end-joining

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403122.1 True 126 ncRNA 0.47 1 19387241 19387366

Neighbor

gene id symbol gene type direction distance location
pus7 pus7 coding downstream 65417 19307947 ~ 19321824 (-)
cd151 cd151,LOC108410837,LOC103041246,LOC107655143,LOC107561168,LOC107674842 coding downstream 81927 19296473 ~ 19305314 (-)
zgc:158398 LOC108275006 coding downstream 119748 19261686 ~ 19267493 (-)
morc2 morc2,LOC107674835 coding downstream 127167 19241160 ~ 19260074 (-)
si:ch211-272n13.3 ankrd26,LOC108428422 coding downstream 182917 19175351 ~ 19204324 (-)
LOC113529648 csnk1g1,LOC108274686,LOC108415052,LOC107559435,LOC107738908,LOC107594477,LOC107686826 coding upstream 6497 19393863 ~ 19424183 (-)
pclaf kiaa0101,LOC102789275 coding upstream 37841 19425207 ~ 19426913 (-)
tmem117 tmem117,LOC107741828 coding upstream 169519 19556885 ~ 19609854 (-)
irak4 irak4 coding upstream 234955 19622321 ~ 19631360 (-)
pdzrn4 pdzrn4,LOC106525479 coding upstream 531238 19918604 ~ 19967530 (-)
G151484 NA non-coding downstream 166898 19220016 ~ 19220343 (-)
G151351 NA non-coding downstream 260003 19126114 ~ 19127238 (-)
G151329 NA non-coding downstream 383674 19003281 ~ 19003567 (-)
G151171 NA non-coding downstream 604829 18704350 ~ 18782412 (-)
G151740 NA non-coding upstream 344785 19732151 ~ 19735864 (-)
LOC117598099 NA non-coding upstream 370993 19758359 ~ 19781393 (-)
G151759 NA non-coding upstream 387508 19774874 ~ 19831107 (-)
G151757 NA non-coding upstream 419904 19807270 ~ 19809067 (-)
G151761 NA non-coding upstream 447036 19834402 ~ 19834869 (-)
gatd1 pddc1,LOC102788149 other downstream 91398 19292209 ~ 19295843 (-)
G150991 LOC108436944 other downstream 958268 18425319 ~ 18428973 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 1023205 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 1081912 18303142 ~ 18305329 (-)
LOC113530227 NA other upstream 403 19387769 ~ 19387895 (-)
LOC113530225 NA other upstream 4390 19391756 ~ 19391882 (-)
trex3 LOC100304973 other upstream 974106 20361472 ~ 20428729 (-)
znf609a znf609,LOC108275264,LOC107745096,LOC107680896 other upstream 1132881 20520247 ~ 20622086 (-)
muc2.1 LOC108274764 other upstream 2352476 21739842 ~ 21770904 (-)

Expression


Co-expression Network