LOC113530227



Basic Information


Item Value
gene id LOC113530227
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 19387769 ~ 19387895 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XR_003403123.2
CCCTGTATCGAAAGTGACCATGGTCTCTGGTTGCCAGGTCATTGATACTACAGGAAAAGAAACCTGAAAGTCTTTCCCGTGTTTGCAGGATTGCTTTGTTCCTGTTAAACCCAGTATCTTTCACACA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_003403123.2 True 127 ncRNA 0.44 1 19387769 19387895

Neighbor


gene id symbol gene type direction distance location
pus7 pus7 coding downstream 65945 19307947 ~ 19321824 (-)
cd151 cd151,LOC108410837,LOC103041246,LOC107655143,LOC107561168,LOC107674842 coding downstream 82455 19296473 ~ 19305314 (-)
zgc:158398 LOC108275006 coding downstream 120276 19261686 ~ 19267493 (-)
morc2 morc2,LOC107674835 coding downstream 127695 19241160 ~ 19260074 (-)
si:ch211-272n13.3 ankrd26,LOC108428422 coding downstream 183445 19175351 ~ 19204324 (-)
LOC113529648 csnk1g1,LOC108274686,LOC108415052,LOC107559435,LOC107738908,LOC107594477,LOC107686826 coding upstream 5968 19393863 ~ 19424183 (-)
pclaf kiaa0101,LOC102789275 coding upstream 37312 19425207 ~ 19426913 (-)
tmem117 tmem117,LOC107741828 coding upstream 168990 19556885 ~ 19609854 (-)
irak4 irak4 coding upstream 234426 19622321 ~ 19631360 (-)
pdzrn4 pdzrn4,LOC106525479 coding upstream 530709 19918604 ~ 19967530 (-)
G151484 NA non-coding downstream 167426 19220016 ~ 19220343 (-)
G151351 NA non-coding downstream 260531 19126114 ~ 19127238 (-)
G151329 NA non-coding downstream 384202 19003281 ~ 19003567 (-)
G151171 NA non-coding downstream 605357 18704350 ~ 18782412 (-)
G151740 NA non-coding upstream 344256 19732151 ~ 19735864 (-)
LOC117598099 NA non-coding upstream 370464 19758359 ~ 19781393 (-)
G151759 NA non-coding upstream 386979 19774874 ~ 19831107 (-)
G151757 NA non-coding upstream 419375 19807270 ~ 19809067 (-)
G151761 NA non-coding upstream 446507 19834402 ~ 19834869 (-)
LOC113530226 NA other downstream 403 19387241 ~ 19387366 (-)
gatd1 pddc1,LOC102788149 other downstream 91926 19292209 ~ 19295843 (-)
G150991 LOC108436944 other downstream 958796 18425319 ~ 18428973 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other downstream 1023733 18353974 ~ 18364036 (-)
etfbkmt etfbkmt other downstream 1082440 18303142 ~ 18305329 (-)
LOC113530225 NA other upstream 3861 19391756 ~ 19391882 (-)
trex3 LOC100304973 other upstream 973577 20361472 ~ 20428729 (-)
znf609a znf609,LOC108275264,LOC107745096,LOC107680896 other upstream 1132352 20520247 ~ 20622086 (-)
muc2.1 LOC108274764 other upstream 2351947 21739842 ~ 21770904 (-)
G152890 NA other upstream 2449313 21837208 ~ 21838766 (-)

Expression



Co-expression Network