LOC117597920


Basic Information

Item Value
gene id LOC117597920
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16460380 ~ 16474228 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578660.1
TCTGTGATTTCCCTGCTCCCAGCACACCTGATTCAAATCATCAGCTAATTACCAGCCCTGAGCTGAAGTGgtgaagcaggaaaaacactaaaacctACAGCACAGAGTTGGGAACCTGCGGACTAGTGGAAGCTTTAGGGTCAGGAATTCACGGGGGcttgttaagtttttttttttttttaacggcatttaaacaaataacagaCTGTATGATAATGTGATAGACTGTGACACTTCGTTCCCGGAAGTCCCCAGGCAGACGCAGGAGGAGCAGAGCACGCAGGGCCGCGCAATGAGTGCACTTCCCCAGATAAGTGCGGGGATTGGAACACAACCCAGATCTAAACGTTCAGTTTTATCAGCAGGTGGCAGTACTGCTCGCACAGACCATGCCTGCTAATCAACCCTAATAAAATACTTTGATAAGATATTTTGAGATGGATTGCGCCATCATCCATAGCGACTTTCCATCATGTGTCTCGGTCTACAATTTTATGTGGATTATTCTTTTAAGTCTGCTTGTATTATGCCAAAGCCAGGAtatttcagattcagttctgTAACTCGTTTACTAGTGGAAGGTCTAACATTTTGGAAAAGTGGAAAGTTTGTATATTGAAGTTGGAAAAAGTAGACAAAATCGCCAATCTCTCATGATCATCATGCTAATAAAGTGTGCTAATAGTGTTCACCAGAACTCACATAAAGcaaaGTGAATAGTAAAGAAGACAGGGCAGCTGGCTGAATCTCTGATCTACAGATGCCTCGGAGGACCAAGCGACTGCAGCTCTGACTCATTTCTCCTGCCATGACACCAAATATATTCTCAGAGGAAAAGAAAGTCTGCTGTGTTTGGTTAATTAAGGACATCAACATGGCTAACTTGTATACATCTCATCTGCACGTTAAAAATTTGCAAAATATCACCGAAGTCTCCTGGAGTACGTCGCTTATCATCAGGTTAACATCCccaaagaggtttttttttccacagccaGAGCAGCCAAGCACAATCAGCAGTTGGAAAATGGCTTCAAAGTATTATCAAGGGGCATTAGCATAAGGTTTGCTTTGATAGAGttttattattcaatatatGGATCCAGAAAGTTAAAAATGGAGaaggtgtgaaaaaaaatggtaaaaaaaaaaggagcagttTCAAATCAGACTCCAAAGCATTGCTCAAAGTAGACAACCACAGGCTTGAACCGGGGCTGTAAGGACATCAAACGCATTGCCTATGTCTTGAAGGGATACTAGagggtcttttttttctgtggtttcaTACTTTGCTAGTGTAAGGCTTCAGAGCTGAGGGAGCAGCTGAGAATTACCTGCAAATGGGTCTTAGCACAAAGTCTCCTCTGTTTTAGGATGCATCATTAGTGTTGTGCTAGAGATGGATGGTGAATTTCTGCGCCAGTTGCTGgctgccagagagagagagcagggggCATGCTCACATCCTGTCCCCAGCCTGCGTGCTGACATTACCCTGGTTCTTATTTAACAGCCAGGAGGCCATGACCTGAAGTGGTAAAATTACAAAAGGGCAAAGAAaaggagaggggaaaaaaaacagcttggcAACAGAACCCGAATCCCATTCTCCCCAAAGAAATTAAAGGTGGTGATGTTTCAGCGGTGGCTCAGTTATCCTCTGTGACCAGCTAAATGTTATGGATACATACAGCTCTGTCCTCCATCCTGATTCTACATACTCGCCTGCCTTTGTCAGGACGCGGAGGCCATGGATGGAGGTGTCCAATTTTTCCACGCGGCCCTTGTGCTTGACACTTCAGAAGTGAAAAATGGAAGCTGTATTTGAAAGAAGGTTACAGTTAAAGACAATGCAAGGTATACCGACTGCTAAATCATTGTCAGGGAAACTAATGATAAGATATCATAAGACAAGTGGATACCATGAAAGATAGAGTGCACTTTCTTGAACCTTAATCAACCGCTGTCTGTTCTCTCCCTGCATTCATCTTGATTTTGCATAGACATGCACATCTTCTGCCCAACGCTGGATGGATACATCAACTTGTCACAGAAAGTGTCACACAAAGCCTTATTTAAATTGTAAGTAGAGAAGCTCTTTGTTGTACTCTTAGTGATGAATGGAAAGAAATAATCATGACAAAGAACACTGAGGCTGCCTCATCCTTCTAGACTGAGGTATCTAGGATTCCCTGGGCAGTGCTGACGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578660.1 True 2212 lncRNA 0.43 4 16460380 16474228

Neighbor

gene id symbol gene type direction distance location
gcnt3 NA coding upstream 35992 16422623 ~ 16424388 (+)
LOC113529796 LOC108275431,LOC108433634,LOC108274563 coding upstream 38690 16400842 ~ 16421690 (+)
klf13 znf467,klf13,znf746,LOC108274922,LOC107598847,LOC107550220 coding upstream 149321 16296593 ~ 16311059 (+)
rab8b rab8b,LOC108433638,LOC107598845,LOC107550224,LOC107752325,LOC107659505 coding upstream 209305 16242248 ~ 16251075 (+)
dnaja dnaja4,LOC107550212,LOC107698158,LOC107752324,LOC107598844,LOC107659503,LOC107715738 coding upstream 224999 16231335 ~ 16235381 (+)
foxb1a foxb1,LOC103353681 coding downstream 24296 16498524 ~ 16500108 (+)
tln2b tln2,LOC108433629,LOC107659514,LOC107703225,LOC107739102 coding downstream 421482 16895710 ~ 17011850 (+)
tpm1 tpm1,LOC106573503,LOC107659515,LOC107739081,LOC107712528,LOC106946143,LOC103141214,LOC107589334 coding downstream 553849 17028077 ~ 17042478 (+)
lactb lactb coding downstream 571773 17046001 ~ 17052211 (+)
tmem266 tmem266 coding downstream 587710 17061938 ~ 17113603 (+)
G149723 NA non-coding upstream 11240 16446039 ~ 16449140 (+)
G149722 NA non-coding upstream 20326 16439706 ~ 16440054 (+)
LOC117597940 NA non-coding upstream 118417 16338590 ~ 16341963 (+)
G149574 NA non-coding upstream 131841 16328256 ~ 16328539 (+)
G149552 NA non-coding upstream 205066 16254684 ~ 16255314 (+)
G149729 NA non-coding downstream 66371 16540599 ~ 16573872 (+)
G150148 NA non-coding downstream 762413 17236641 ~ 17236946 (+)
G150152 sqrdl non-coding downstream 779439 17253667 ~ 17255337 (+)
G150261 LOC108275011 non-coding downstream 955915 17430143 ~ 17434377 (+)
G150265 NA non-coding downstream 972021 17446249 ~ 17446460 (+)
LOC113529564 ano9,LOC108442698 other upstream 637789 15807990 ~ 15822591 (+)
svip svip other upstream 735289 15721278 ~ 15725091 (+)
slc5a12 slc5a12 other upstream 807696 15563306 ~ 15652684 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other upstream 2631049 13790973 ~ 13829331 (+)
ces2b LOC108275184 other upstream 2683509 13761334 ~ 13776871 (+)
G150589 LOC108274445 other downstream 1360009 17834237 ~ 17842535 (+)
tmem17 tmem17,znf774,LOC107678976 other downstream 1708326 18182554 ~ 18184033 (+)
rfwd3 rfwd3,LOC107754982 other downstream 2200782 18675010 ~ 18683428 (+)
urahb LOC108274538 other downstream 2247367 18721595 ~ 18724686 (+)
nfat5a LOC108274760,LOC108428435 other downstream 2273599 18747827 ~ 18796259 (+)

Expression


Co-expression Network