LOC117597924


Basic Information

Item Value
gene id LOC117597924
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 13329642 ~ 13333044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578665.1
CTAACTATGAAGATGCATCAAAAACCTATGCCGAAGAAATAAGGGCTTGGACCGCATCATATGGAAACAGACCCCTGGGACCTATTTATAACGTGTCCTGTATCTCCGAAGGATAACCTGCCCAGGAAGGTCACTGTGCCTTCCAGTGAGAAACAATGTACAATACACTCCAGGTCAAGGGTGAAGAGGAGAGGCGTACACATCATACTTTTAGCATGAATTACACCATGTCAACCAAGAACAACAACACTACAGTGGGAGAAACCCCCTAGATCATCTGGAAAGCACATCTAACTCCACCCTATTGAACACCACCACCAGCCCCCCAACCCACTCGACCTCTCCTCGTACCCCCTGTAGAGCCTGGGTAGAGTGGGGACAGTCCAGTGTGATTAACACCCAGGCGGGAACAACATGTCAGTACATGTCTGCTCTGAGCCAGCCTTACACCGCTCTCACACACTGATCTACGGTCAGCTCTCCAGCCCAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578665.1 True 493 lncRNA 0.50 3 13329642 13333044

Neighbor

gene id symbol gene type direction distance location
mob2a mob2,LOC108274974,LOC108411394 coding upstream 113651 13170695 ~ 13215991 (+)
dusp8a dusp8a,LOC108274976,LOC107675452,LOC107675267,LOC107553852,LOC107744185,LOC107549289,LOC107758748 coding upstream 167713 13123143 ~ 13161929 (+)
phlda2 phlda2,phla2 coding upstream 466087 12862501 ~ 12863555 (+)
nap1l4a nap1l4a,LOC108275311,LOC108439256,LOC107675283 coding upstream 479249 12837011 ~ 12850393 (+)
si:ch211-236l14.4 LOC108274486,LOC108439252 coding upstream 523189 12781288 ~ 12806453 (+)
myod1 myod1,LOC107758742 coding downstream 23189 13356233 ~ 13358154 (+)
pdcd2l pdcd2l coding downstream 132229 13465273 ~ 13470743 (+)
banp banp,LOC107742045 coding downstream 140140 13473184 ~ 13522795 (+)
LOC113529436 znf469 coding downstream 190578 13523622 ~ 13712474 (+)
LOC113529751 rassf8,LOC108428816 coding downstream 408916 13741960 ~ 13757527 (+)
G147641 NA non-coding upstream 141358 13187691 ~ 13188284 (+)
G147630 NA non-coding upstream 164852 13164576 ~ 13164790 (+)
G147557 ptprj,LOC108274725 non-coding upstream 231228 12994188 ~ 13098414 (+)
G147784 NA non-coding downstream 26991 13360035 ~ 13371776 (+)
G147787 LOC108274999 non-coding downstream 57273 13390317 ~ 13390708 (+)
G147792 NA non-coding downstream 59054 13392098 ~ 13392749 (+)
G147814 NA non-coding downstream 65780 13398824 ~ 13399650 (+)
G147791 NA non-coding downstream 80448 13413492 ~ 13432584 (+)
G147542 NA other upstream 412388 12916919 ~ 12917254 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other upstream 1731672 11595499 ~ 11597970 (+)
hrh2a LOC108274475 other upstream 2023324 11295128 ~ 11306318 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other upstream 2734041 10554366 ~ 10595601 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other upstream 2781713 10537251 ~ 10547929 (+)
zgc:172145 LOC108275003 other downstream 16279 13349323 ~ 13353262 (+)
prr33 prr33,LOC108428828,LOC107595228,LOC107742059,LOC107675453 other downstream 39828 13372872 ~ 13389196 (+)
ces2b LOC108275184 other downstream 428290 13761334 ~ 13776871 (+)
fanci fanci,LOC107673243,LOC107670230,LOC107564606 other downstream 457929 13790973 ~ 13829331 (+)
slc5a12 slc5a12 other downstream 2230262 15563306 ~ 15652684 (+)

Expression


Co-expression Network